swMATH ID: 17336
Software Authors: E. Quevillon, V. Silventoinen, S. Pillai, N. Harte, N. Mulder, R. Apweiler, R. Lopez
Description: InterProScan: protein domains identifier. InterProScan [E. M. Zdobnov and R. Apweiler (2001) Bioinformatics, 17, 847–848] is a tool that combines different protein signature recognition methods from the InterPro [N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bradley, P. Bork, P. Bucher, L. Cerutti et al. (2005) Nucleic Acids Res., 33, D201–D205] consortium member databases into one resource. At the time of writing there are 10 distinct publicly available databases in the application. Protein as well as DNA sequences can be analysed. A web-based version is accessible for academic and commercial organizations from the EBI (http://www.ebi.ac.uk/InterProScan/). In addition, a standalone Perl version and a SOAP Web Service [J. Snell, D. Tidwell and P. Kulchenko (2001) Programming Web Services with SOAP, 1st edn. O’Reilly Publishers, Sebastopol, CA, http://www.w3.org/TR/soap/] are also available to the users. Various output formats are supported and include text tables, XML documents, as well as various graphs to help interpret the results.
Homepage: http://nar.oxfordjournals.org/content/33/suppl_2/W116.short
Related Software: BLAST; PSI-BLAST; UniProt; EasyGene; PROSITE; MultiLoc2; Cell-PLoc; MultiLoc; Pfam; I-TASSER; KEGG; GeneMarkS; PAML; CATH; JBROWSE; MAKER; PCAP; FragGeneScan; AVID; Prodigal
Cited in: 6 Publications

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