BioGRID swMATH ID: 17422 Software Authors: C. Stark, B. Breitkreutz, T. Reguly, L. Boucher, A. Breitkreutz, M. Tyers Description: BioGRID: A general repository for interaction datasets. Access to unified datasets of protein and genetic interactions is critical for interrogation of gene/protein function and analysis of global network properties. BioGRID is a freely accessible database of physical and genetic interactions available at http://www.thebiogrid.org. BioGRID release version 2.0 includes >116 000 interactions from Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster and Homo sapiens. Over 30 000 interactions have recently been added from 5778 sources through exhaustive curation of the Saccharomyces cerevisiae primary literature. An internally hyper-linked web interface allows for rapid search and retrieval of interaction data. Full or user-defined datasets are freely downloadable as tab-delimited text files and PSI-MI XML. Pre-computed graphical layouts of interactions are available in a variety of file formats. User-customized graphs with embedded protein, gene and interaction attributes can be constructed with a visualization system called Osprey that is dynamically linked to the BioGRID. Homepage: https://thebiogrid.org/ Related Software: KEGG; IntAct; Cytoscape; Pfam; MCODE; R; Pajek; STRING; CFinder; COPASI; UniProt; ARACNE; PSI-BLAST; igraph; Bioconductor; JASPAR; WebGestalt; Reactome; BLAST; COMPARTMENTS Cited in: 33 Documents all top 5 Cited by 104 Authors 2 Livingstone, Kevin 2 Olofsson, Peter 2 Re, Matteo 2 Valentini, Giorgio 2 Wu, Fangxiang 1 Airoldi, Edoardo M. 1 Anderson, James W. 1 André, Elisabeth 1 Baths, Veeky 1 Bayir, Murat Ali 1 Bertoni, Alberto 1 Can, Tolga 1 Cesa-Bianchi, Nicolò 1 Chen, Luonan 1 Cochran, Garner 1 Cohen, Nathann 1 Colley, Charles 1 Coudert, David 1 Dagilis, Andrius 1 De la Cruz Cabrera, Omar 1 Delgado, Alberto Santos 1 Ducoffe, Guillaume 1 Engström, Christopher 1 Erdem, Esra 1 Franks, Alexander M. 1 Frasca, Marco 1 Gao, Jianzhao 1 Gao, Yuanyuan 1 Gleich, David F. 1 Guney, Tacettin Dogacan 1 Guo, Wei-Feng 1 Heath, Allison P. 1 How, Javier J. 1 Hoyas, Sergio 1 Hu, Jingbo 1 Hu, Ke 1 Humphreys, Joshua 1 Huynh-Thu, Vân Anh 1 Indhumathy, M. 1 Jiang, Wei 1 Johansson, Patrik 1 Kasabov, Nikola K. 1 Kavraki, Lydia E. 1 Keith, Jonathan M. 1 Kirk, Paul D. W. 1 Kocarev, Ljupco 1 Lancin, Aurélien 1 Li, Huijia 1 Liang, Jiye 1 Liu, Fei 1 Lv, Yingli 1 Ma, Jinlong 1 MacArthur, Ben D. 1 MacPherson, Karen 1 Marín, Ignacio 1 Markowetz, Florian 1 Matar, Mona 1 Mu, Junfang 1 Nassar, Huda 1 Navlakha, Saket 1 Nelander, Sven 1 Osat, Saeed 1 Oztok, Umut 1 Panigrahi, Priya P. 1 Qi, Yanjun 1 Radicchi, Filippo 1 Rasti, Saeid 1 Reichel, Lothar 1 Ruan, Jishou 1 Sánchez-García, Rubén J. 1 Sanguinetti, Guido 1 Seitz, Kerry A. jun. 1 Shojaie, Ali 1 Silvestrov, Sergei D. 1 Singh, Ritambhara 1 Singh, Tarkeshwar 1 Singh, Tiratha Raj 1 Sondhi, Arjun 1 Steinman, Douglas 1 Stojkoski, Viktor 1 Strash, Darren 1 Stumpf, Michael P. H. 1 Swartling, Fredrik J. 1 Tang, Liang 1 Utkovski, Zoran 1 Vogiatzis, Chrysafis 1 von Stechow, Louise 1 Wang, Beilun 1 Wang, Huiping 1 Wang, Jie 1 Wang, Jizhe 1 Wei, Ze-Gang 1 Weishaupt, Holger 1 Xiang, Ju 1 Yang, Lei 1 Zeng, Tao 1 Zhang, Jingsong 1 Zhang, Shaowu 1 Zhang, Yan 1 Zhang, Zhaopeng ...and 4 more Authors all top 5 Cited in 20 Serials 4 Journal of Theoretical Biology 3 Methods in Molecular Biology 2 Discrete Applied Mathematics 2 Mathematical Biosciences 2 Physica A 2 Machine Learning 2 Journal of Statistical Mechanics: Theory and Experiment 1 Information Sciences 1 Journal of Computational and Applied Mathematics 1 Theoretical Computer Science 1 SIAM Journal on Matrix Analysis and Applications 1 Neural Networks 1 Annals of Operations Research 1 Neural Computation 1 Theory and Practice of Logic Programming 1 Journal of Machine Learning Research (JMLR) 1 Statistical Applications in Genetics and Molecular Biology 1 The Annals of Applied Statistics 1 Computer Science Review 1 Springer Handbooks all top 5 Cited in 12 Fields 23 Biology and other natural sciences (92-XX) 10 Combinatorics (05-XX) 7 Computer science (68-XX) 5 Statistics (62-XX) 2 General and overarching topics; collections (00-XX) 2 Probability theory and stochastic processes (60-XX) 1 Linear and multilinear algebra; matrix theory (15-XX) 1 Group theory and generalizations (20-XX) 1 General topology (54-XX) 1 Statistical mechanics, structure of matter (82-XX) 1 Operations research, mathematical programming (90-XX) 1 Systems theory; control (93-XX) Citations by Year