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VMD

swMATH ID: 18651
Software Authors: Andrew Dalke, William Humphrey, Klaus Schulten
Description: VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS X, Unix, or Windows, is distributed free of charge, and includes source code. VMD is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer.
Homepage: http://www.ks.uiuc.edu/Research/vmd/
Related Software: NAMD; Gromacs; CHARMM; PyMOL; RasMol; APBS; Chimera; AMBER; PDB2PQR; R; Python; Quantum Espresso; Wannier90; Open Babel; OpenMM; LINCS; UniProt; Jmol; PETSc; NAMD2
Referenced in: 75 Publications
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Referenced by 234 Authors

3 Chen, Zhen
3 Lin, Lin
3 Shen, Luming
2 Damle, Anil
2 Ilieva, Nevena
2 Jiang, Xi Zhuo
2 Kalé, Laxmikant V.
2 Karniadakis, George Em
2 Konieczny, Leszek
2 Luo, Kai Hong
2 Roterman, Irena
2 Schulten, Klaus
2 Skeel, Robert D.
2 Tozzini, Valentina
1 Amaro, Rommie E.
1 Amat, Pietro
1 An, Dong
1 Arnold, Axel
1 Asghari, Mohsen
1 Atwal, Harpreet K.
1 Ayub, Nicolás
1 Banach, Mateusz
1 Barba, Lorena A.
1 Barclay, Paul L.
1 Bardhan, Jaydeep P.
1 Bauman, Paul T.
1 Belobrov, Peter I.
1 Benros, Cristina
1 Berini, Carolina
1 Bhandarkar, Milind
1 Bian, Xin
1 Birgin, Ernesto G.
1 Board, John A. jun.
1 Bonella, Sara
1 Botello Rionda, Salvador
1 Boutilier, Michael S. H.
1 Brunger, Axel T.
1 Brunner, Robert J.
1 Brylinski, Michal
1 Bu, Bing
1 Buehler, Markus J.
1 Bursill, Leslie A.
1 Buttry, Daniel A.
1 Camiola, Vito Dario
1 Carbone, Alessandra
1 Carrillo-Tripp, Mauricio
1 Chen, Jiahui
1 Chen, Xiaole
1 Chen, Yiran
1 Chen, Zhiguo
1 Coveney, Peter V.
1 Cruz-Chú, Eduardo R.
1 Czapla, Luke
1 de Brevern, Alexandre G.
1 De Fabritiis, Gianni
1 Delp, Scott L.
1 Demkowicz, Leszek F.
1 Deng, Mingge
1 Denisov, Ivan A.
1 Diao, Jiajie
1 Dib, Linda
1 Ding, Yanhong
1 Eargle, John
1 Eastman, Peter
1 Eslahchi, Changiz
1 Fahrenberger, Florian
1 Fath, L.
1 Feng, Muye
1 Fu, Yi
1 Gao, David Yang
1 Gao, Huajian
1 Geng, Weihua
1 Gogolinska, Anna
1 Greiner, Walter
1 Grinberg, Leopold
1 Gu, Yuantong
1 Gursoy, Attila
1 Habibi, Mahnaz
1 Hagen, Hans-Juergen
1 Hamacher, Kay
1 Hamada, Tsuyoshi
1 Hamann, Bernd
1 Han, Huiyun
1 Hao, Xuejun
1 Harvey, M. J.
1 Hazout, Serge
1 He, Jiadi
1 Hege, Hans-Christian
1 Heider, Yousef
1 Hermans, Jan
1 Hernandez Padilla, Carlos Alberto
1 Hernandez, Alan E. Lopez
1 Herrera-Guzmán, Rafael
1 Hochbruck, Marlis
1 Holm, Christian
1 Hoseinpoor, S. Mohammad
1 Hosseini, Sayed-Rzgar
1 Hou, Yanzhen
1 Huber, Gary A.
1 Hudson, Robert B.
...and 134 more Authors

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