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LncFinder

swMATH ID: 18819
Software Authors: Han Siyu, Li Ying, Liang Yanchun
Description: R package LncFinder. LncFinder: Long Non-Coding RNA Identification Based on Features of Sequence, EIIP and Secondary Structure. Functions for predicting sequences are mRNAs or long non-coding RNAs. Default models are trained on human, mouse and wheat datasets by employing SVM. Features are based on intrinsic composition of sequence, EIIP value (electron-ion interaction pseudopotential) and secondary structure. The model can also be built on users’ own data.
Homepage: https://cran.r-project.org/web/packages/LncFinder/index.html
Source Code: https://github.com/cran/LncFinder
Dependencies: R
Keywords: CRAN; R package; Long Non-Coding; RNA Identification; EIIP
Cited in: 0 Publications