ProMoT swMATH ID: 2007 Software Authors: F Tränkle, M Zeitz, M Ginkel; Waschler, Roland; Angeles-Palacios, Odon; Ginkel, Martin; Kienle, Achim Description: ProMoT is the Process Modeling Tool, a software for the construction and manipulation of complex technical and biological systems. ProMoT has its origins in process engineering. Together with the simulation environment Diana it provides capabilities for the development of dynamic models based on differential-algebraic equations, and their simulation and further analysis. For the application in Systems Biology key features of ProMoT are the development of modular models, the use of specialized modeling-libraries, and the support for model-exchange via the international standard SBML. Of specific importance for successful work in interdisciplinary teams is the availability of graphical methods for model editing and exploration, because this defines a common language for direct communication about models without the need for in-depth mathematical knowledge. ProMoT already implements graphical tools for both the implementation, and the exploration and visualization of models. ProMoT has being used as a modeling tool not only for the setup of dynamic models, but also for the visual construction of Boolean models that can be analyzed with CellNetAnalyzer. Homepage: http://www.mpi-magdeburg.mpg.de/projects/promot/index.html Keywords: Object-oriented; Modelling tool; Chemical processes; Model libraries Related Software: TABASCO; lpSolve; SUNDIALS; SciPy; SynBioSS; BioJADE; Celldesigner; SCAMP; CellML; PySCeS; TinkerCell; Mantissa; AIM@SHAPE; OBSCURE; COBOL; SingSurf; LISP Cited in: 5 Publications Further Publications: http://www.mpi-magdeburg.mpg.de/projects/promot/refs.html Standard Articles 1 Publication describing the Software, including 1 Publication in zbMATH Year Object-oriented modelling of large-scale chemical engineering processes with ProMoT. Zbl 1147.93371Waschler, Roland; Angeles-Palacios, Odon; Ginkel, Martin; Kienle, Achim 2006 all top 5 Cited by 17 Authors 2 Ginkel, Martin 1 Angeles-Palacios, Odon 1 Chudej, Kurt 1 Gessner, Samuel 1 Gilles, Ernst Dieter 1 Hashagen, Ulf 1 Hussain, Ijaz 1 Kienle, Achim 1 Liu, Yan 1 Peiffer, Jeanne 1 Pesch, Hans Josef 1 Ruan, Xiaoe 1 Sternberg, Kati 1 Tournès, Dominique 1 Tränkle, F. 1 Waschler, Roland 1 Zeitz, Michael J. Cited in 4 Serials 2 Mathematical and Computer Modelling of Dynamical Systems 1 SIAM Journal on Applied Mathematics 1 Oberwolfach Reports 1 International Journal of Systems Science. Principles and Applications of Systems and Integration all top 5 Cited in 10 Fields 3 Systems theory; control (93-XX) 1 General and overarching topics; collections (00-XX) 1 History and biography (01-XX) 1 Partial differential equations (35-XX) 1 Dynamical systems and ergodic theory (37-XX) 1 Geometry (51-XX) 1 Numerical analysis (65-XX) 1 Computer science (68-XX) 1 Optics, electromagnetic theory (78-XX) 1 Astronomy and astrophysics (85-XX) Citations by Year