swMATH ID: 20296
Software Authors: Deisy Morselli Gysi, Andre Voigt, Tiago Miranda Fragoso, Eivind Almaas, Katja Nowick
Description: R package wTO. Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network. Computes the Weighted Topological Overlap (wTO) networks. Once a data.frame containing the count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction.It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a Consensus network, based on multiple wTOs. Also includes a visualization tool for the final network.
Homepage: https://cran.r-project.org/web/packages/wTO/index.html
Source Code:  https://github.com/cran/wTO
Dependencies: R
Keywords: Molecular Networks; arXiv q-bio.MN; arXiv; CRAN; Co-expression network; Network; Expression; R package; Software; Consensus Network; wTO
Related Software: R; data.table; stringr; som; visNetwork; igraph; network; WGCNA
Cited in: 0 Publications