swMATH ID: 20297
Software Authors: Grady Weyenberg, Ruriko Yoshida
Description: R package kdetrees: Nonparametric method for identifying discordant phylogenetic trees. A non-parametric method for identifying potential outlying observations in a collection of phylogenetic trees based on the methods of Owen and Provan (2011). Such discordant trees may indicate problems with sequence annotation or tree reconstruction, or they may represent interesting biological phenomena, such as horizontal gene transfers.
Homepage: https://cran.r-project.org/web/packages/kdetrees/index.html
Source Code:  https://github.com/cran/kdetrees
Dependencies: R
Related Software: BEAST; Mesquite; PhyloNet; ASTRAL-II; Phylo-MCOA; PAML; CLIFF; t-SNE; Clustal X; ape; MrBayes; tree-structured-covariance; MEGA
Cited in: 5 Publications

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