swMATH ID: 22457
Software Authors: Xie, D.; Li, A.; Wang, M.; Fan, Z.; Feng, H.
Description: LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST. Subcellular location of a protein is one of the key functional characters as proteins must be localized correctly at the subcellular level to have normal biological function. In this paper, a novel method named LOCSVMPSI has been introduced, which is based on the support vector machine (SVM) and the position-specific scoring matrix generated from profiles of PSI-BLAST. With a jackknife test on the RH2427 data set, LOCSVMPSI achieved a high overall prediction accuracy of 90.2
Homepage: https://www.ncbi.nlm.nih.gov/pubmed/15980436
Related Software: ESLpred; Cell-PLoc; Euk-PLoc; Esub8; WoLF PSORT; Euk-mPLoc; BLAST; PSI-BLAST; PSLpred; Psortb; BaCelLo; Hum-mPLoc; UniProt; Cd-hit; Nuc-ploc; PseAAC; MultiLoc; MultiLoc2; Hum-PLoc; SubChlo
Cited in: 7 Publications

Citations by Year