swMATH ID: 23514
Software Authors: Warden, C. D., H. Lee, J. D. Tompkins, X. Li, C. Wang, A. D. Riggs, H. Yu, R. Jove, Y.-C. Yuan
Description: COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis: This package provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options.
Homepage: https://bioconductor.org/packages/release/bioc/html/COHCAP.html
Related Software: IMA; Bioconductor; BSmooth; methylKit; SAAP-RRBS; MOABS; DMAP; HMM-DM; RRBSMAP; Bisulfighter; MethylSig; HMM-Fisher; BS Seeker; KEGG; Enrichr; RnBeads; R; mCSEA; BSMAP; PASS-bis
Cited in: 2 Documents

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