BUCKy swMATH ID: 23619 Software Authors: Larget, BR; Kotha, SK; Dewey, CN; Ané, C Description: BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis. Motivation: BUCKy is a C++ program that implements Bayesian concordance analysis. The method uses a non-parametric clustering of genes with compatible trees, and reconstructs the primary concordance tree from clades supported by the largest proportions of genes. A population tree with branch lengths in coalescent units is estimated from quartet concordance factors. Availability: BUCKy is open source and distributed under the GNU general public license at www.stat.wisc.edu/∼ane/bucky/. Homepage: https://academic.oup.com/bioinformatics/article/26/22/2910/227750 Related Software: ASTRAL-II; Quartets MaxCut; ASTRID; STEM-hy; MrBayes; OCTAL; iGTP; NINJA; Rec-I-DCM3; DACTAL; TNT; SuperFine; FastTree; BEAST; BIONJ; PAUP*; RAxML; SINGULAR; DynaDup; QT-GILD Cited in: 9 Publications all top 5 Cited by 18 Authors 3 Degnan, James H. 2 Allman, Elizabeth S. 2 Rhodes, John Anthony 2 Roch, Sébastien 2 Warnow, Tandy J. 1 Bayzid, Md. Shamsuzzoha 1 Hill, Max 1 Mahbub, Sazan 1 Marron, James Stephen 1 Provan, Scott 1 Rahman, Mohammad Sohel 1 Reaz, Rezwana 1 Rosenberg, Noah A. 1 Saha, Arpita 1 Sawmya, Shashata 1 Skwerer, Sean 1 Stadler, Tanja 1 Steel, Michael Anthony all top 5 Cited in 6 Serials 1 Mathematical Biosciences 1 Bulletin of Mathematical Biology 1 Theoretical Population Biology 1 SIAM Journal on Optimization 1 Computational Biology 1 Journal of Theoretical Biology Cited in 5 Fields 8 Biology and other natural sciences (92-XX) 2 Combinatorics (05-XX) 2 Operations research, mathematical programming (90-XX) 1 General and overarching topics; collections (00-XX) 1 Numerical analysis (65-XX) Citations by Year