EpiEstim swMATH ID: 24060 Software Authors: Anne Cori Description: R package EpiEstim: EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves. This package provides tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence. Homepage: https://cran.r-project.org/web/packages/EpiEstim/index.html Source Code: https://github.com/cran/EpiEstim Dependencies: R Related Software: R0; Surveillance; R; GitHub; epinet; tscount; EpiModel; ergm; statnet; network; Stan; rstan; acp; amei; RladyBug; rstanarm; epidemia; IcyTree; hergm; Tracer Cited in: 18 Publications all top 5 Cited by 51 Authors 1 Adak, Debadatta 1 Bairagi, Nandadulal 1 Batista, Milan 1 Browne, Cameron J. 1 Canals C., Andrea 1 Canals L., Mauricio 1 Castañeda, Carlos 1 Cerón, Juan Felipe 1 Cheke, Robert A. 1 Chin, Andrew 1 Cortés, Santiago 1 Cruz, Érica 1 Cuadrado N., Cristóbal 1 De Simone, Andrea 1 Estrada, Ernesto 1 Franco, Camila 1 Gulbudak, Hayriye 1 Hasan, Agus 1 Jahja, Maria 1 Jung, Eunok 1 Kennedy, David A. 1 Lambert, David E. 1 Lee, Jonggul 1 Li, Xuanya 1 Liu, Peiyu 1 Liu, Rui 1 Maiorana, Andrea 1 Majumder, Abhijit 1 Meneghelli, Marco 1 Nouvellet, Pierre 1 Páez, Gustavo Nicolás 1 Palatella, Luigi 1 Piangerelli, Marco 1 Quiroz, Adolfo J. 1 Resnati, Mario 1 Saldaña, Fernando 1 Shaw, Clara L. 1 Tang, Sanyi 1 Tibshirani, Ryan J. 1 Vanni, Fabio 1 Vargas, Gina 1 Velasco-Hernandez, Jorge X. 1 Wang, Fei 1 Wang, Linhua 1 Wang, Peng 1 Waxman, David 1 Webb, Glenn Francis 1 Xia, Fan 1 Xiao, Yanni 1 Yuan, Baoyin 1 Zea, José Fernando all top 5 Cited in 13 Serials 4 Journal of Theoretical Biology 3 Chaos, Solitons and Fractals 1 Journal of Mathematical Biology 1 Physics Reports 1 Bulletin of Mathematical Biology 1 Theoretical Population Biology 1 Statistical Science 1 Abstract and Applied Analysis 1 Communications in Nonlinear Science and Numerical Simulation 1 Mathematical Biosciences and Engineering 1 Journal of Biological Dynamics 1 S\(\vec{\text{e}}\)MA Journal 1 Epidemiologic Methods all top 5 Cited in 7 Fields 17 Biology and other natural sciences (92-XX) 4 Statistics (62-XX) 1 Ordinary differential equations (34-XX) 1 Probability theory and stochastic processes (60-XX) 1 Numerical analysis (65-XX) 1 Game theory, economics, finance, and other social and behavioral sciences (91-XX) 1 Systems theory; control (93-XX) Citations by Year