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diversitree

swMATH ID: 26122
Software Authors: Richard G. FitzJohn, Emma E. Goldberg, Karen Magnuson-Ford
Description: R package diversitree: Comparative ’Phylogenetic’ Analyses of Diversification. Contains a number of comparative ’phylogenetic’ methods, mostly focusing on analysing diversification and character evolution. Contains implementations of ’BiSSE’ (Binary State ’Speciation’ and Extinction) and its unresolved tree extensions, ’MuSSE’ (Multiple State ’Speciation’ and Extinction), ’QuaSSE’, ’GeoSSE’, and ’BiSSE-ness’ Other included methods include Markov models of discrete and continuous trait evolution and constant rate ’speciation’ and extinction.
Homepage: https://cran.r-project.org/web/packages/diversitree/index.html
Source Code: https://github.com/cran/diversitree
Dependencies: R
Related Software: R; GEIGER; Rphylopars; mvMORPH; PCMBase; BEAUti; ape; Rcpp; SPLITT; phytools; BEAST; AUGEM; adaptMCMC; MrBayes; MultiBUGS; apTreeshape; BEAGLE; PMMUsingSPLITT; PCMBaseCpp; POUMM
Cited in: 6 Publications

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