swMATH ID: 26797
Software Authors: Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, et al.
Description: PyCogent: a toolkit for making sense from sequence. We have implemented in Python the COmparative GENomic Toolkit, a fully integrated and thoroughly tested framework for novel probabilistic analyses of biological sequences, devising workflows, and generating publication quality graphics. PyCogent includes connectors to remote databases, built-in generalized probabilistic techniques for working with biological sequences, and controllers for third-party applications. The toolkit takes advantage of parallel architectures and runs on a range of hardware and operating systems, and is available under the general public license from http://sourceforge.net/projects/pycogent.
Homepage: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2375001/
Dependencies: Python
Related Software: Python; bioperl; PyMOL; Biopython; Omics Pipe; Anaconda; IPython; PyPI; BioRuby; BioSQL; BioJava; Ruffus; KNIME; Taverna; Bio.Phylo; DendroPy; SciPy; ProDy; PERL; Bioconductor
Cited in: 1 Publication

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