×

Signal-CF

swMATH ID: 26854
Software Authors: Chou KC, Shen HB
Description: Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides. We have developed an automated method for predicting signal peptide sequences and their cleavage sites in eukaryotic and bacterial protein sequences. It is a 2-layer predictor: the 1st-layer prediction engine is to identify a query protein as secretory or non-secretory; if it is secretory, the process will be automatically continued with the 2nd-layer prediction engine to further identify the cleavage site of its signal peptide. The new predictor is called Signal-CF, where C stands for ”coupling” and F for ”fusion”, meaning that Signal-CF is formed by incorporating the subsite coupling effects along a protein sequence and by fusing the results derived from many width-different scaled windows through a voting system. Signal-CF is featured by high success prediction rates with short computational time, and hence is particularly useful for the analysis of large-scale datasets. Signal-CF is freely available as a web-server at http://chou.med.harvard.edu/bioinf/Signal-CF/ or http://202.120.37.186/bioinf/Signal-CF/.
Homepage: https://www.ncbi.nlm.nih.gov/pubmed/17434148
Related Software: Cell-PLoc; Memtype-2L; Euk-mPLoc; Signal-3L; ProtIdent; EzyPred; GPCR-CA; Hum-mPLoc; HIVcleave; Hum-PLoc; AAindex; GPCR-GIA; Euk-PLoc; Phobius; Gpos-PLoc; Virus-ploc; LIBSVM; BLAST; PSI-BLAST; FoldRate
Referenced in: 28 Publications
all top 5

Referenced by 93 Authors

3 Georgiou, Dimitrios N.
3 Karakasidis, Theodoros E.
3 Nieto Roig, Juan Jose
2 Brahnam, Sheryl
2 Chou, Kuochen
2 Deng, Naiyang
2 Guo, Yanzhi
2 Jahandideh, Mina
2 Jahandideh, Samad
2 Li, Menglong
2 Lumini, Alessandra
2 Nanni, Loris
2 Shao, Xiaojian
2 Tian, Yingjie
2 Wu, Lingyun
2 Yu, Lezheng
1 Abdolmaleki, Parviz
1 Anand, Ashish
1 Araabi, Babak Nadjar
1 Barfeie, Mahdyar
1 Çalık, Pınar
1 Cheng, Feng
1 de Magalhães, Alexandre Lopes
1 Ding, Yongsheng
1 Du, Qishi
1 Esmaeili, Maryam
1 Frenkel, Zakharia M.
1 Frenkel, Zeev M.
1 González Díaz, Humberto
1 Han, Libin
1 Hoseini, Afsaneh
1 Hoseini, Somayyeh
1 Huang, Dan
1 Huang, Ri-Bo
1 Huang, Wei
1 Jing, Ling
1 Kavousi, Kaveh
1 Kung, Sunyuan
1 Li, Gongbing
1 Li, Jia-Huang
1 Li, Yizhou
1 Luo, Jiesi
1 Mak, Man-Wai
1 Massahi, Aslan
1 Megaritis, Athanasios C.
1 Miri Disfani, Fatemeh
1 Mishra, Pooja
1 Mohabatkar, Hassan
1 Mohsenzadeh, Sasan
1 Moosavi-Movahedi, Ali Akbar
1 Moshiri, Behzad
1 Munteanu, Cristian Robert
1 Pandey, Paras Nath
1 Pang, Zong-Wen
1 Peng, Qinke
1 Peng, Zhen-Ling
1 Perez-Bello, Alcides
1 Qin, Wenli
1 Sadeghi, Mehdi
1 Sarvestani, Amir Sabet
1 Schulman, Ira G.
1 Shi, Jianyu
1 Snir, Sagi
1 Suganthan, Ponnuthurai Nagaratnam
1 Theodorescu, Dan
1 Trifonov, Edward N.
1 Ubeira, Florencio M.
1 Uriarte, Eugenio
1 Wan, Shibiao
1 Wang, Desheng
1 Wang, Jin
1 Wang, Tianming
1 Wang, Xiaobo
1 Wang, Yong
1 Wang, Yongcui
1 Wang, Yurong
1 Wei, Hang
1 Wei, Yu-Tuo
1 Xiao, Rong-quan
1 Xiong, Wenjia
1 Xu, Tao
1 Yang, Jianyi
1 Yang, Li
1 Yang, Lianping
1 Yu, Zuguo
1 Zeng, Yuhong
1 Zhang, Chenyu
1 Zhang, Jianmin
1 Zhang, Ruijie
1 Zhang, Tongliang
1 Zhang, Xiangde
1 Zhao, Yapu
1 Zhong, Tao

Referencing Publications by Year