swMATH ID: 29184
Software Authors: P. Aboyoun, H. Pagès, M. Lawrence
Description: R/Bioconductor package GenomicRanges: The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.
Homepage: https://bioconductor.org/packages/3.9/bioc/html/GenomicRanges.html
Dependencies: R
Related Software: Bioconductor; R; ggplot2; GenomicAlignments; ASReml; IRanges; GenomicFeatures; GCTA; Matrix eQTL; ape; SummarizedExperiment; TASSEL; rJava; rTASSEL; GenomicTuples; PePr; STAR; intePareto; iClusterPlus; BiSeq
Cited in: 2 Publications

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