GenomicRanges swMATH ID: 29184 Software Authors: P. Aboyoun, H. Pagès, M. Lawrence Description: R/Bioconductor package GenomicRanges: The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure. Homepage: https://bioconductor.org/packages/3.9/bioc/html/GenomicRanges.html Dependencies: R Related Software: Bioconductor; R; ggplot2; GenomicAlignments; ASReml; IRanges; GenomicFeatures; GCTA; Matrix eQTL; ape; SummarizedExperiment; TASSEL; rJava; rTASSEL; GenomicTuples; PePr; STAR; intePareto; iClusterPlus; BiSeq Cited in: 2 Publications all top 5 Cited by 6 Authors 1 Akalin, Altuna 1 Franke, Verdan 1 Lawrence, Michael F. 1 Morgan, Martin 1 Ronen, Jonathan 1 Uyar, Bora Cited in 2 Serials 1 Statistical Science 1 Chapman & Hall/CRC Computational Biology Series Cited in 2 Fields 2 Statistics (62-XX) 2 Biology and other natural sciences (92-XX) Citations by Year