mrsFAST swMATH ID: 29574 Software Authors: F. Hach, F. Hormozdiari, C. Alkan, F. Hormozdiari, I. Birol, et al. Description: mrsFAST: a cache-oblivious algorithm for short-read mapping. mrsFAST is designed to map short reads to reference genome assemblies; in a fast and memory-efficient manner. mrsFAST is a cache-oblivous short read mapper that optimizes cache usage to get higher performance. Currently Supported Features: Mismatches, no indels; Paired-end Mapping; Discordant Paired-end Mapping (to be used in conjunction with Variation Hunter); Best Mapping; Limited Mapping; SNP-aware Mapping; Multi-threading. Homepage: http://mrfast.sourceforge.net/ Source Code: https://github.com/sfu-compbio/mrsfast Related Software: VarScan; BSMAP; BS Seeker; MethylCoder; Bowtie 2; Bismark; BSmooth; Cutadapt; Trimmomatic; FASTX; FastQC; Samtools; GATK; Velvet; ARACHNE; SpliceTrap; DWE; CLIPZ; mirTools; miRExpress Cited in: 2 Publications Cited by 5 Authors 2 Hackenberg, Michael 1 Aransay, Ana M. 1 Barturen, Guillermo 1 Oliver, José L. 1 Rodríguez-Ezpeleta, Naiara Cited in 0 Serials Cited in 2 Fields 2 Biology and other natural sciences (92-XX) 1 General and overarching topics; collections (00-XX) Citations by Year