swMATH ID: 29587
Software Authors: Wang, W.C., Lin, F.M., Chang, W.C., Lin, K.Y., Huang, H.D., Lin, N.S.
Description: miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression. Conclusion: We develop miRExpress, which is a database-supported, efficient and flexible tool for detecting miRNA expression profile. The analysis of two Illumina data sets constructed from human and plant demonstrate the effectiveness of miRExpress to obtain miRNA expression profiles and show the usability in finding novel miRNAs.
Homepage: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2767369/
Related Software: ARACHNE; SpliceTrap; DWE; CLIPZ; mirTools; TargetSpy; miRNAkey; PatMaN; SeqBuster; ProMiR II; MiRonTop; MiPred; miRanalyzer; DIANA-mirExTra; MiRFinder; HPeak; FindPeaks; mrsFAST; SHARCGS; QSRA
Cited in: 2 Publications

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