miRExpress swMATH ID: 29587 Software Authors: Wang, W.C., Lin, F.M., Chang, W.C., Lin, K.Y., Huang, H.D., Lin, N.S. Description: miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression. Conclusion: We develop miRExpress, which is a database-supported, efficient and flexible tool for detecting miRNA expression profile. The analysis of two Illumina data sets constructed from human and plant demonstrate the effectiveness of miRExpress to obtain miRNA expression profiles and show the usability in finding novel miRNAs. Homepage: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2767369/ Related Software: ARACHNE; SpliceTrap; DWE; CLIPZ; mirTools; TargetSpy; miRNAkey; PatMaN; SeqBuster; ProMiR II; MiRonTop; MiPred; miRanalyzer; DIANA-mirExTra; MiRFinder; HPeak; FindPeaks; mrsFAST; SHARCGS; QSRA Cited in: 2 Publications all top 5 Cited by 10 Authors 1 Aransay, Ana M. 1 Cha, Lei 1 Fang, Xiangzhong 1 Fu, Hanjiang 1 Hackenberg, Michael 1 Jiang, Zhichao 1 Li, Wuju 1 Liu, Hui 1 Rodríguez-Ezpeleta, Naiara 1 Zheng, Xiaofei Cited in 1 Serial 1 Frontiers of Mathematics in China Cited in 3 Fields 2 Biology and other natural sciences (92-XX) 1 General and overarching topics; collections (00-XX) 1 Statistics (62-XX) Citations by Year