swMATH ID: 29766
Software Authors: Giusti C
Description: CliqueTop is a collection of matlab scripts for doing topological analysis of symmetric matrices. The syntax for using the package is: ompute_clique_topology(A) for any symmetric matrix A. Options and details can be found in the documentation for the compute_clique_topology function. CliqueTop currently relies on the following software packages, which are included in this repository for convenience and should function automatically without installation: For persistent homology computations, we make use of Perseus by Vidit Nanda. As of this writing, the current version can be found at http://www.sas.upenn.edu/ vnanda/perseus/index.html. We recommend using the snapshot provided in this repository, as the input/output format for Perseus may change in the future. Cliquer, for the clique splitting version of the clique enumeration algorithm, a C package by Sampo Niskanen and Patric R. J. Östergård, available at http://users.aalto.fi/ pat/cliquer.html. The code was written by Chad Giusti, and the underlying ideas are the result of joint work with Vladimir Itskov and Carina Curto. The work was supported by NSF DMS-1122519. More details can be found in Giusti, Pastalkova, Curto and Itskov, ”Clique topology reveals instrinsic geometric structure in neural correlations.” (arXiv:1502.06172 [q-bio.NC] and arXiv:1502.06173 [q-bio.NC])
Homepage: https://github.com/nebneuron/clique-top
Source Code:  https://github.com/nebneuron/clique-top
Dependencies: Matlab
Related Software: Holes; Ripser; GitHub; javaPlex; PersistenceImages; Gudhi; SciPy; Brain Connectivity Toolbox; Eirene; NetworkX; Dionysus; GenLouvain; Ripser.py; Statsmodels; Python; AGL-Score; DioDe; TopologyNet; HERMES; DIPHA
Cited in: 30 Documents
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Cited by 95 Authors

4 Curto, Carina Pamela
2 Bassett, Danielle S.
2 Giusti, Chad
2 Hernández Serrano, Daniel
2 Kališnik Verovšek, Sara
2 Mémoli, Facundo
2 Nie, Chun-Xiao
2 Sánchez Gómez, Darío
1 Baas, Nils Andreas
1 Battiston, Federico
1 Belton, Robin Lynne
1 Benson, Austin R.
1 Bergomi, Mattia Giuseppe
1 Beshkov, Kosio
1 Betzel, Richard F.
1 Bianconi, Ginestra
1 Blevins, Ann Sizemore
1 Bubenik, Peter
1 Buchet, Mickaël
1 Cencetti, Giulia
1 Centeno, Eduarda Gervini Zampieri
1 Chen, Jiahui
1 Chowdhury, Samir
1 Crawford, Lorin
1 Ding, Li
1 Douw, Linda
1 Dunn, Benjamin
1 Eliassi-Rad, Tina
1 Escolar, Emerson G.
1 Fasy, Brittany Terese
1 Ferri, Massimo
1 Grange, Pascal
1 Gross, Elizabeth
1 Hernández-Serrano, Juan
1 Horn, Paul S.
1 Hu, Ping
1 Hull, Michael B.
1 Iacopini, Iacopo
1 Itskov, Vladimir
1 Jadbabaie, Ali
1 Jaquette, Jonathan
1 Jeffries, Jack
1 Kahn, Ari
1 Kim, Woojin
1 Latora, Vito
1 Lehn, Christian
1 Leng, Hui
1 Lim, Lek-Heng
1 Limic, Vlada
1 Lippner, Gábor
1 Lucas, Maxime
1 Mertz, Rostik
1 Micka, Samuel
1 Millman, David L.
1 Monod, Anthea
1 Moreni, Giulia
1 Morrison, Katherine
1 Mulder, Daan
1 Naitzat, Gregory
1 Omar, Mohamed
1 Paik, Joshua
1 Pastalkova, Eva
1 Patania, Alice
1 Patel, Dhruv V.
1 Patiño-Galindo, Juan Ángel
1 Petri, Giovanni
1 Ribando-Gros, Emily
1 Rivin, Igor
1 Rosen, Zvi
1 Rybakken, Erik
1 Salinas, Daniel
1 Santos, Fernando Antônio Nóbrega
1 Schaub, Michael T.
1 Schenfisch, Anna
1 Schupbach, Jordan
1 Schweinhart, Benjamin
1 Shiu, Anne
1 Sizemore, Ann E.
1 Small, Michael
1 Tiesinga, Paul H. E.
1 Tong, Yiying
1 Torres, Leo
1 Vettel, Jean M.
1 Vriend, Chris
1 Wang, Dong
1 Wang, Rui
1 Wei, Guowei
1 Whittle, Benjamin
1 Williams, Lucia
1 Young, Jean-Gabriel
1 Youngs, Nora
1 Zhao, Rundong
1 Zhao, Yi
1 Zhitnikov, Andrey
1 Zuffi, Lorenzo

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