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apTreeshape

swMATH ID: 31620
Software Authors: Nicolas Bortolussi, Michael Blum, Eric Durand, Olivier Francois, Odile Maliet
Description: R package apTreeshape: Analyses of Phylogenetic Treeshape. Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the ’ape’ package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class ”phylo” (from ’ape’ package) can be converted easily. Implements methods described in Bortolussi et al. (2005) <doi:10.1093/bioinformatics/bti798> and Maliet et al. (2017) <doi:10.1101/224295>.
Homepage: https://cran.r-project.org/web/packages/apTreeshape/index.html
Source Code:  https://github.com/cran/apTreeshape
Dependencies: R
Related Software: R; ape; AUGEM; adaptMCMC; MrBayes; GEIGER; MultiBUGS; Rphylopars; diversitree; BEAUti; mvMORPH; BEAGLE; PMMUsingSPLITT; PCMBase; PCMBaseCpp; POUMM; pkgdown; roxygen2; Rcpp; git2r
Cited in: 7 Publications

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