apTreeshape swMATH ID: 31620 Software Authors: Nicolas Bortolussi, Michael Blum, Eric Durand, Olivier Francois, Odile Maliet Description: R package apTreeshape: Analyses of Phylogenetic Treeshape. Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the ’ape’ package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class ”phylo” (from ’ape’ package) can be converted easily. Implements methods described in Bortolussi et al. (2005) <doi:10.1093/bioinformatics/bti798> and Maliet et al. (2017) <doi:10.1101/224295>. Homepage: https://cran.r-project.org/web/packages/apTreeshape/index.html Source Code: https://github.com/cran/apTreeshape Dependencies: R Related Software: R; ape; AUGEM; adaptMCMC; MrBayes; GEIGER; MultiBUGS; Rphylopars; diversitree; BEAUti; mvMORPH; BEAGLE; PMMUsingSPLITT; PCMBase; PCMBaseCpp; POUMM; pkgdown; roxygen2; Rcpp; git2r Cited in: 7 Publications all top 5 Cited by 24 Authors 1 Bartoszek, Krzysztof 1 Chang, Huilan 1 Coronado, Tomás M. 1 Costa, Carolina L. N. 1 Devillard, Sébastien 1 Fischer, Mareike 1 François, Olivier 1 Fuchs, Michael 1 Herbst, Lina 1 Jombart, Thibaut 1 Magnuson-Ford, Karen 1 Marquitti, Flavia M. D. 1 Martinez de Aguiar, Marcus Aloizio 1 Mioland, Céline 1 Mooers, Arne ø. 1 Pavoine, Sandrine 1 Perez, S. Ivan 1 Pontier, Dominique 1 Ramos, Marlon F. 1 Rioux Paquette, Sébastien 1 Rosselló, Francesc 1 Schneider, David M. 1 Steel, Michael Anthony 1 Wicke, Kristina Cited in 5 Serials 2 Journal of Mathematical Biology 2 Journal of Theoretical Biology 1 Mathematical Biosciences 1 Physica A 1 Applicationes Mathematicae Cited in 5 Fields 6 Biology and other natural sciences (92-XX) 3 Combinatorics (05-XX) 3 Statistics (62-XX) 2 Probability theory and stochastic processes (60-XX) 1 Statistical mechanics, structure of matter (82-XX) Citations by Year