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V-Xtractor

swMATH ID: 33186
Software Authors: Martin Hartmann, Charles G. Howes, Kessy Abarenkov, William W. Mohn, R. Henrik Nilsson
Description: V-Xtractor: An Open-Source, High-Throughput Software Tool to Identify and Extract Hypervariable Regions of Small Subunit (16S/18S) Ribosomal RNA Gene Sequences. V-Xtractor (http://www.cmde.science.ubc.ca/mohn/software.html) uses Hidden Markov Models to locate, verify, and extract defined hypervariable sequence segments (V1-V9) from bacterial, archaeal, and fungal small-subunit rRNA sequences. With a detection efficiency of 99.6
Homepage: https://www.sciencedirect.com/science/article/pii/S0167701210002745
Related Software: MEGAN; TIPP; iTOL; pplacer
Referenced in: 1 Publication

Referenced in 0 Serials

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