## CRNSimulator

swMATH ID: | 33636 |

Software Authors: | Soloveichik, D. |

Description: | CRNSimulator Mathematica Package: A Mathematica package for working with networks of coupled chemical reactions. It forms a foundation for syntactic manipulation of chemical reaction networks as Mathematica expressions. It allows mixing and matching mass-action kinetics with other kinds of dynamics, and provides a simple way to simulate experiments in which a sequence of chemical additions is performed. It is particularly well-suited for engineered chemical systems, in which chemical reaction networks can be used as a kind of ”programming language”. CRNSimulatorSSA Mathematica Package [BETA]: Extends CRNSimulator to perform Gillespie SSA simulation. The main simulation loop is compiled to C code for speed. Input reactions and initial counts using the same syntax as CRNSimulator. |

Homepage: | http://users.ece.utexas.edu/%7esoloveichik/crnsimulator.html |

Dependencies: | Mathematica |

Related Software: | z3; Mathematica; CRN++ |

Cited in: | 3 Publications |

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### Cited by 8 Authors

2 | Soloveichik, David |

1 | Alistarh, Dan |

1 | Dudek, Bartłomiej |

1 | Khurshid, Sarfraz |

1 | Kosowski, Adrian |

1 | Uznański, Przemysław |

1 | Vasic, Marko |

1 | Winfree, Erik |

### Cited in 0 Serials

### Cited in 1 Field

3 | Computer science (68-XX) |