CRNSimulator swMATH ID: 33636 Software Authors: Soloveichik, D. Description: CRNSimulator Mathematica Package: A Mathematica package for working with networks of coupled chemical reactions. It forms a foundation for syntactic manipulation of chemical reaction networks as Mathematica expressions. It allows mixing and matching mass-action kinetics with other kinds of dynamics, and provides a simple way to simulate experiments in which a sequence of chemical additions is performed. It is particularly well-suited for engineered chemical systems, in which chemical reaction networks can be used as a kind of ”programming language”. CRNSimulatorSSA Mathematica Package [BETA]: Extends CRNSimulator to perform Gillespie SSA simulation. The main simulation loop is compiled to C code for speed. Input reactions and initial counts using the same syntax as CRNSimulator. Homepage: http://users.ece.utexas.edu/%7esoloveichik/crnsimulator.html Dependencies: Mathematica Related Software: z3; Mathematica; CRN++ Cited in: 3 Publications all top 5 Cited by 8 Authors 2 Soloveichik, David 1 Alistarh, Dan 1 Dudek, Bartłomiej 1 Khurshid, Sarfraz 1 Kosowski, Adrian 1 Uznański, Przemysław 1 Vasic, Marko 1 Winfree, Erik Cited in 0 Serials Cited in 1 Field 3 Computer science (68-XX) Citations by Year