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BWA

swMATH ID: 34374
Software Authors: Li H.; Durbin R.
Description: Burrows-Wheeler Aligner: BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads
Homepage: http://bio-bwa.sourceforge.net
Related Software: Soap; Bowtie 2; Samtools; PatternHunter; SHRiMP; GATK; r-index; PyClone; Velvet; R; ZOOM; RazerS; MEGAHIT; ART; vg; Big-BWT; TreeClone; SciClone; PhyloWGS; PurityEst
Referenced in: 48 Publications
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Referenced by 150 Authors

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3 Pissis, Solon P.
2 Barton, Carl
2 Daykin, Jacqueline W.
2 Gagie, Travis
2 Ji, Yuan
2 Kärkkäinen, Juha
2 Kucherov, Gregory
2 Lecroq, Thierry
2 Léonard, Martine
2 Lipták, Zsuzsanna
2 Na, Joong Chae
2 Park, Heejin
2 Park, Kunsoo
2 Policriti, Alberto
2 Sciortino, Marinella
2 Välimäki, Niko
2 Weese, David
1 Abouelhoda, Mohamed Ibrahim
1 Alanko, Jarno
1 Attolini, Camille Stephan-Otto
1 Bannai, Hideo
1 Beller, Timo
1 Benoit, Gaetan
1 Bhanot, Gyan V.
1 Bichsel, Benjamin
1 Bini, Sébastien
1 Bittner, Lucie
1 Bonizzoni, Paola
1 Boucher, Christina
1 Cenzato, Davide
1 Chateau, Annie
1 Chen, Yangjun
1 Chiorazzi, Nicholas
1 Crochemore, Maxime
1 D’Agostino, Giovanna
1 Dallard, Clément
1 de Ridder, Corne
1 Della Vedova, Gianluca
1 Do, Huy Hoang
1 Drezen, Erwan
1 Egidi, Lavinia
1 Fernandes, Francisco E. jun.
1 Filion, Guillaume J.
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1 Flaherty, Patrick
1 Flouri, Tomáš
1 Francisco, Alexandre P.
1 Giancarlo, Raffaele
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1 Gog, Simon
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1 Groult, Richard
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1 Hanada, Hiroyuki
1 He, Shai
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1 Huang, Yimin
1 I, Tomohiro
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1 Kim, Hyunjoon
1 Kim, Youngho
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1 Landau, Gad M.
1 Lavenier, Dominique
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1 Lee, Inbok
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1 Lefebvre, Arnaud
1 Lemaitre, Claire
1 Li, Yu
1 Limasset, Antoine
1 Lin, Jimmy
1 Liu, Jiangbin
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1 Louza, Felipe A.
1 Lu, Jie
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1 Marchet, Camille
1 Marsilio, Sonia
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1 Min, Seunghwan
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