BWA swMATH ID: 34374 Software Authors: Li H.; Durbin R. Description: Burrows-Wheeler Aligner: BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads Homepage: http://bio-bwa.sourceforge.net Related Software: Soap; Bowtie 2; Samtools; PatternHunter; SHRiMP; GATK; r-index; PyClone; Velvet; R; ZOOM; RazerS; MEGAHIT; ART; vg; Big-BWT; TreeClone; SciClone; PhyloWGS; PurityEst Referenced in: 48 Publications all top 5 Referenced by 150 Authors 3 Iliopoulos, Costas S. 3 Mäkinen, Veli 3 Manzini, Giovanni 3 Mouchard, Laurent 3 Müller, Peter 3 Pissis, Solon P. 2 Barton, Carl 2 Daykin, Jacqueline W. 2 Gagie, Travis 2 Ji, Yuan 2 Kärkkäinen, Juha 2 Kucherov, Gregory 2 Lecroq, Thierry 2 Léonard, Martine 2 Lipták, Zsuzsanna 2 Na, Joong Chae 2 Park, Heejin 2 Park, Kunsoo 2 Policriti, Alberto 2 Sciortino, Marinella 2 Välimäki, Niko 2 Weese, David 1 Abouelhoda, Mohamed Ibrahim 1 Alanko, Jarno 1 Attolini, Camille Stephan-Otto 1 Bannai, Hideo 1 Beller, Timo 1 Benoit, Gaetan 1 Bhanot, Gyan V. 1 Bichsel, Benjamin 1 Bini, Sébastien 1 Bittner, Lucie 1 Bonizzoni, Paola 1 Boucher, Christina 1 Cenzato, Davide 1 Chateau, Annie 1 Chen, Yangjun 1 Chiorazzi, Nicholas 1 Crochemore, Maxime 1 D’Agostino, Giovanna 1 Dallard, Clément 1 de Ridder, Corne 1 Della Vedova, Gianluca 1 Do, Huy Hoang 1 Drezen, Erwan 1 Egidi, Lavinia 1 Fernandes, Francisco E. jun. 1 Filion, Guillaume J. 1 Fiscon, Giulia 1 Flaherty, Patrick 1 Flouri, Tomáš 1 Francisco, Alexandre P. 1 Giancarlo, Raffaele 1 Gîrdea, Marta 1 Giroudeau, Rodolphe 1 Giuliani, Sara 1 Gog, Simon 1 Grossi, Roberto 1 Groult, Richard 1 Guesnet, Yannick 1 Gulukota, Kamalakar 1 Hanada, Hiroyuki 1 He, Shai 1 Heese, Klaus 1 Huang, Yimin 1 I, Tomohiro 1 Ivanov, Pesho 1 Jiang, Zhengyuan 1 Karhu, Kalle 1 Khiabanian, Hossein 1 Kim, Hyunjoon 1 Kim, Youngho 1 Kota, Karthik 1 Kourie, Derrick G. 1 Kroiss, Manuel 1 Kudo, Mineichi 1 Kutzner, Arne 1 Ladra, Susana 1 Landau, Gad M. 1 Lavenier, Dominique 1 Lecompte, Lolita 1 Lee, Inbok 1 Lee, Juhee 1 Lefebvre, Arnaud 1 Lemaitre, Claire 1 Li, Yu 1 Limasset, Antoine 1 Lin, Jimmy 1 Liu, Jiangbin 1 Liu, Yongchao 1 Louza, Felipe A. 1 Lu, Jie 1 Lv, Zhibao 1 Marchet, Camille 1 Marsilio, Sonia 1 Masillo, Francesco 1 Min, Seunghwan 1 Mitreva, Makedonka 1 Musombuka, Themba K. 1 Nakamura, Atsuyoshi ...and 50 more Authors all top 5 Referenced in 17 Serials 13 Theoretical Computer Science 5 Journal of Discrete Algorithms 4 The Annals of Applied Statistics 2 Algorithmica 2 Information and Computation 1 Discrete Applied Mathematics 1 Information Processing Letters 1 Journal of Mathematical Biology 1 Journal of Statistical Physics 1 Journal of Computer and System Sciences 1 Theoretical Population Biology 1 International Journal of Foundations of Computer Science 1 Mathematical Biosciences and Engineering 1 Mathematics in Computer Science 1 Algorithms 1 1 Journal of Theoretical Biology all top 5 Referenced in 6 Fields 35 Computer science (68-XX) 31 Biology and other natural sciences (92-XX) 7 Statistics (62-XX) 4 Combinatorics (05-XX) 2 Operations research, mathematical programming (90-XX) 1 Probability theory and stochastic processes (60-XX) Referencing Publications by Year