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pSLIP

swMATH ID: 35549
Software Authors: Sarda, D.; Chua, GH; Li, KB; Krishnan, A.
Description: pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties. Results: In this paper, we propose a new algorithm called pSLIP which uses Support Vector Machines (SVMs) in conjunction with multiple physicochemical properties of amino acids to predict protein subcellular localization in eukaryotes across six different locations, namely, chloroplast, cytoplasmic, extracellular, mitochondrial, nuclear and plasma membrane. The algorithm was applied to the dataset provided by Park and Kanehisa and we obtained prediction accuracies for the different classes ranging from 87.7
Homepage: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1182350/
Related Software: AAindex; Memtype-2L; Cell-PLoc; PseAAC; ESLpred; SVM-Prot; DeepWalk; node2vec; t-SNE; dna2vec; word2vec; AUGUSTUS; Scikit; FoldRate; Signal-CF; GPCR-CA; ProtIdent; Phobius; OCTOPUS; clusfind
Cited in: 5 Publications

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