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CARMAweb

swMATH ID: 36164
Software Authors: Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z
Description: CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. CARMAweb allows the analysis of Affymetrix GeneChip, ABI microarrays and two color microarrays. The analysis includes normalization and data preprocessing, detection for differentially expressed genes, cluster analysis and GO analysis. All calculations (except the cluster analysis) are performed in R using functions provided by the BioConductor packages. The web application bases on the Java 2 Enterprise Edition (J2EE) including Java Servlets and JSP technology, the Jakarta Struts framework and Enterprise Java Beans (EJB). As a interface between Java and R the Rserve package is used.
Homepage: https://carmaweb.genome.tugraz.at/carma/
Dependencies: R
Related Software: R; marray; ArrayExpress; affy; gcrma; Bioconductor; WebArray; limmaGUI; Expression Profiler
Referenced in: 0 Publications