gmapR swMATH ID: 38445 Software Authors: Cory Barr, Thomas Wu, Michael Lawrence Description: Bioconductor/R package gmapR: An R interface to the GMAP/GSNAP/GSTRUCT suite. GSNAP and GMAP are a pair of tools to align short-read data written by Tom Wu. This package provides convenience methods to work with GMAP and GSNAP from within R. In addition, it provides methods to tally alignment results on a per-nucleotide basis using the bam_tally tool. Homepage: https://bioconductor.org/packages/release/bioc/html/gmapR.html Dependencies: R Related Software: STAR; intePareto; iClusterPlus; BiSeq; MethylSeekR; rGREAT; rGADEM; Trim Galore; Rbowtie; ggbio; GenomicAlignments; MAnorm; GISTIC2.0; deFuse; normr; ODIN; genomation; compGenomRData; BiocManager; Rsamtools Cited in: 1 Publication Cited by 4 Authors 1 Akalin, Altuna 1 Franke, Verdan 1 Ronen, Jonathan 1 Uyar, Bora Cited in 1 Serial 1 Chapman & Hall/CRC Computational Biology Series Cited in 2 Fields 1 Statistics (62-XX) 1 Biology and other natural sciences (92-XX) Citations by Year