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gmapR

swMATH ID: 38445
Software Authors: Cory Barr, Thomas Wu, Michael Lawrence
Description: Bioconductor/R package gmapR: An R interface to the GMAP/GSNAP/GSTRUCT suite. GSNAP and GMAP are a pair of tools to align short-read data written by Tom Wu. This package provides convenience methods to work with GMAP and GSNAP from within R. In addition, it provides methods to tally alignment results on a per-nucleotide basis using the bam_tally tool.
Homepage: https://bioconductor.org/packages/release/bioc/html/gmapR.html
Dependencies: R
Related Software: STAR; intePareto; iClusterPlus; BiSeq; MethylSeekR; rGREAT; rGADEM; Trim Galore; Rbowtie; ggbio; GenomicAlignments; MAnorm; GISTIC2.0; deFuse; normr; ODIN; genomation; compGenomRData; BiocManager; Rsamtools
Cited in: 1 Publication

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