swMATH ID: 41418
Software Authors: Henry Adams, Sofya Chepushtanova, Tegan Emerson, Eric Hanson, Michael Kirby, Francis Motta, Rachel Neville, Chris Peterson, Patrick Shipman, Lori Ziegelmeier
Description: Persistence Images: A Stable Vector Representation of Persistent Homology. Many datasets can be viewed as a noisy sampling of an underlying space, and tools from topological data analysis can characterize this structure for the purpose of knowledge discovery. One such tool is persistent homology, which provides a multiscale description of the homological features within a dataset. A useful representation of this homological information is a persistence diagram (PD). Efforts have been made to map PDs into spaces with additional structure valuable to machine learning tasks. We convert a PD to a finite-dimensional vector representation which we call a persistence image (PI), and prove the stability of this transformation with respect to small perturbations in the inputs. The discriminatory power of PIs is compared against existing methods, showing significant performance gains. We explore the use of PIs with vector-based machine learning tools, such as linear sparse support vector machines, which identify features containing discriminating topological information. Finally, high accuracy inference of parameter values from the dynamic output of a discrete dynamical system (the linked twist map) and a partial differential equation (the anisotropic Kuramoto-Sivashinsky equation) provide a novel application of the discriminatory power of PIs.
Homepage: https://arxiv.org/abs/1507.06217
Source Code:  https://gitlab.com/csu-tda/PersistenceImages
Related Software: GitHub; Ripser; PHAT; Scikit; Gudhi; Persistence Landscape; TDA; Dionysus; TopologyNet; javaPlex; Perseus; PersistenceCurves; Ripser.py; CliqueTop; LearningAlgebraicVarieties; jHoles; SW1PerS; SciPy; AFLOW-SYM; Spglib
Cited in: 42 Publications
all top 5

Cited by 102 Authors

4 Maroulas, Vasileios
3 Adams, Henry
3 Divol, Vincent
3 Oballe, Christopher
3 Wei, Guowei
2 Bubenik, Peter
2 Cang, Zixuan
2 Chazal, Frédéric
2 Hiraoka, Yasuaki
2 Kusano, Genki
2 Neville, Rachel
2 Peterson, Chris
2 Ziegelmeier, Lori
1 Aminian, Manuchehr
1 Bendich, Paul
1 Berry, Eric A.
1 Beshkov, Kosio
1 Boothe, Dave
1 Brutti, Pierpaolo
1 Calcina, Sabrina S.
1 Carlsson, Gunnar E.
1 Chen, Yen-Chi
1 Chepushtanova, Sofya V.
1 Cherne, Alan
1 Chung, Yu-Min
1 Ciocanel, Maria-Veronica
1 Cisewski-Kehe, Jessi
1 Crawford, Lorin
1 Dawes, Adriana T.
1 Dong, Zhetong
1 Emerson, Tegan H.
1 Farnell, Elin
1 Fasy, Brittany Terese
1 Feng, Michelle
1 Feragen, Aasa
1 Franaszczuk, Piotr J.
1 Fukumizu, Kenji
1 Gameiro, Marcio F.
1 Grbić, Jelena
1 Guillemard, Mijail
1 Heo, Giseon
1 Hess, Kathryn P.
1 Hofer, Christoph D.
1 Hotz, Thomas
1 Huckemann, Stephan F.
1 Iske, Armin
1 Jaquette, Jonathan
1 Johnson, Megan
1 Juda, Mateusz
1 Juenemann, Riley
1 Jung, Jae-Hun
1 Kališnik Verovšek, Sara
1 Kerick, Scott
1 Kimura, Masao
1 Kwitt, Roland
1 Lacombe, Théo
1 Lawson, Austin
1 Leitte, Heike
1 Levrard, Clément
1 Leygonie, Jacob
1 Lin, Hongwei
1 McCleary, Alexander
1 Mckinley, Scott A.
1 Micucci, Cassie Putman
1 Mike, Joshua L.
1 Miller, Ezra
1 Mirth, Joshua
1 Monod, Anthea
1 Motta, Francis C.
1 Munch, Elizabeth
1 Nasrin, Farzana
1 Niethammer, Marc
1 Obayashi, Ippei
1 Oudot, Steve Yann
1 Padellini, Tullia
1 Patiño-Galindo, Juan Ángel
1 Polonik, Wolfgang
1 Porter, Mason Alexander
1 Pu, Junyu
1 Ramamurthy, Karthikeyan Natesan
1 Rieck, Bastian
1 Royer, Martin
1 Sadlo, Filip
1 Schweinhart, Benjamin
1 Seidl, Markus
1 Shipman, Patrick D.
1 Shonkwiler, Clayton
1 Singhal, Kritika
1 Skryzalin, Jacek
1 Som, Anirudh
1 Spannaus, Adam
1 Tiesinga, Paul H. E.
1 Tillmann, Ulrike
1 Topaz, Chad M.
1 Turaga, Pavan K.
1 Tymochko, Sarah
1 Vipond, Oliver
1 Wu, Jie
1 Xia, Kelin
1 Xian, Lu
...and 2 more Authors

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