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Catalyst.jl

swMATH ID: 41453
Software Authors: Sam Isaacson; et al.
Description: Catalyst.jl is a symbolic modeling package for analysis and high performance simulation of chemical reaction networks. Catalyst defines symbolic ReactionSystems, which can be created programmatically or easily specified using Catalyst’s domain specific language (DSL). Leveraging ModelingToolkit and Symbolics.jl, Catalyst enables large-scale simulations through auto-vectorization and parallelism. Symbolic ReactionSystems can be used to generate ModelingToolkit-based models, allowing the easy simulation and parameter estimation of mass action ODE models, Chemical Langevin SDE models, stochastic chemical kinetics jump process models, and more. Generated models can be used with solvers throughout the broader SciML ecosystem, including higher level SciML packages (e.g. for sensitivity analysis, parameter estimation, machine learning applications, etc).
Homepage: https://catalyst.sciml.ai/dev/
Source Code:  https://github.com/SciML/Catalyst.jl
Dependencies: Julia
Related Software: MEANS; CERENA; ModelingToolkit.jl; Compartor; DifferentialEquations.jl; Julia; MomentClosure.jl
Cited in: 0 Publications