Bioconductor swMATH ID: 4205 Software Authors: open development project Description: Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 554 software packages, and an active user community. Bioconductor is also available as an Amazon Machine Image (AMI). Homepage: http://www.bioconductor.org/packages/release/BiocViews.html#___Software Programming Languages: R Operating Systems: UNIX, Windows, MacOS X Dependencies: R Keywords: Microarrays; Variants; Sequence Data; Annotation; High Throughput Assays; links; portal Related Software: R; gcrma; edgeR; limma; KEGG; DEseq; affy; flowCore; ggplot2; DESeq2; BaySeq; Voom; CRAN; lattice; igraph; TopHat; flowClust; ArrayExpress; multtest; Rcpp Cited in: 232 Documents Standard Articles 2 Publications describing the Software, including 2 Publications in zbMATH Year Statistics and data analysis for microarrays using R and Bioconductor. With CD-ROM. 2nd ed. Zbl 1279.62014Drăghici, Sorin 2012 Bioinformatics and computational biology solutions using R and Bioconductor. Zbl 1142.62100Gentleman, Robert (ed.); Carey, Vincent J. (ed.); Huber, Wolfgang (ed.); Irizarry, Rafael A. (ed.); Dudoit, Sandrine (ed.) 2005 all top 5 Cited by 614 Authors 7 Dudoit, Sandrine 6 Irizarry, Rafael A. 5 Bickel, David R. 5 Nettleton, Dan 5 Van der Laan, Mark Johannes 4 Aoshima, Makoto 4 Yata, Kazuyoshi 3 Gentleman, Robert 3 Gottardo, Raphael 3 Holmes, Susan P. 3 Keles, Sunduz 3 Liu, Peng 3 Robin, Stéphane 3 Rosenthal, Jeffrey S. 3 Smyth, Gordon K. 3 Speed, Terence Paul 3 Witten, Daniela M. 3 Zhao, Hongyu 2 Boettiger, Carl 2 Bühlmann, Peter 2 Carey, Vincent J. 2 Chekouo, Thierry 2 Chen, Mengjie 2 Chen, Songxi 2 Csárdi, Gábor 2 Drăghici, Sorin 2 Foulkes, Andrea S. 2 Gill, Ryan S. 2 Hornik, Kurt 2 Hothorn, Torsten 2 Huang, Haiyan 2 Huber, Wolfgang 2 Ibrahim, Joseph George 2 Kolaczyk, Eric D. 2 Li, Hongzhe 2 Liang, Kun 2 Ligges, Uwe 2 Lun, Aaron T. L. 2 Marron, James Stephen 2 Mayrink, Vinicius Diniz 2 McGee, Monnie 2 Newton, Michael A. 2 Nguyen, Yet Tien 2 Nyangoma, Stephen O. 2 Parmigiani, Giovanni 2 Parrish, Rudolph S. 2 Risso, Davide 2 Ritz, Christian 2 Robinson, Mark D. 2 Sarkar, Deepayan 2 Stingo, Francesco Claudio 2 Streibig, Jens Carl 2 Sun, Shuying 2 Sun, Wei 2 Vannucci, Marina 2 Vingron, Martin 2 Wu, Baolin 2 Yang, Jinyoung 2 Yu, Xiaoqing 2 Zhao, Sihai Dave 2 Zhou, Wen 1 Abdallah, Samer A. 1 Ahlquist, Paul 1 Airoldi, Edoardo M. 1 Akalin, Altuna 1 Alexander, Warren S. 1 Altman, Douglas G. 1 Amos, Christopher I. 1 Anand, Sonia 1 Andreassen, Bettina K. 1 Angelopoulos, Nicos 1 Archer, Kellie J. 1 Arshad, S. Hasan 1 Arslan, Olcay 1 Bacallado, Sergio 1 Bai, Jiawei 1 Baladandayuthapani, Veerabhadran 1 Bandara, Udika 1 Bar, Haim Y. 1 Basodi, Sunitha 1 Beißbarth, Tim 1 Bembom, Oliver 1 Bengtsson, Henrik 1 Benjamini, Yuval 1 Beyene, Joseph 1 Bharath, Karthik 1 Bhattacharjee, Atanu 1 Bi, Ran 1 Bickeböller, Heike 1 Bickel, Peter John 1 Bien, Jacob 1 Biganzoli, Elia 1 Billingham, Lucinda J. 1 Billor, Nedret 1 Binder, Harald 1 Binsl, Thomas W. 1 Blocker, Alexander W. 1 Boer, Judith M. 1 Boley, Nathan 1 Bonafede, Elisabetta ...and 514 more Authors all top 5 Cited in 70 Serials 29 Statistical Applications in Genetics and Molecular Biology 21 The Annals of Applied Statistics 13 Computational Statistics and Data Analysis 12 Computational Statistics 11 Biometrics 7 Use R! 6 Journal of the American Statistical Association 6 Statistical Science 6 Journal of Agricultural, Biological, and Environmental Statistics 5 Biometrical Journal 5 Journal of Multivariate Analysis 5 Journal of Applied Statistics 5 Methods in Molecular Biology 4 The American Statistician 4 Statistics & Probability Letters 4 Statistical Analysis and Data Mining 3 Journal of Statistical Planning and Inference 3 Methodology and Computing in Applied Probability 3 Computational Biology and Chemistry 3 Journal of Computational and Graphical Statistics 3 Statistics and Computing 3 Journal of Theoretical Biology 2 International Journal of Approximate Reasoning 2 Communications in Statistics. Theory and Methods 2 Statistical Papers 2 Bernoulli 2 Biostatistics 2 Brazilian Journal of Probability and Statistics 2 Mathematical Biosciences and Engineering 2 Computational & Mathematical Methods in Medicine 2 Electronic Journal of Statistics 2 Chapman & Hall/CRC Biostatistics Series 2 Bayesian Analysis 2 Statistics for Biology and Health 2 Chapman & Hall/CRC Mathematical and Computational Biology Series 1 The Canadian Journal of Statistics 1 Discrete Applied Mathematics 1 Mathematical Biosciences 1 Scandinavian Journal of Statistics 1 Bulletin of Mathematical Biology 1 The Annals of Statistics 1 Kybernetika 1 Theoretical Population Biology 1 Sequential Analysis 1 The Annals of Applied Probability 1 Communications in Statistics. Simulation and Computation 1 Journal of Statistical Computation and Simulation 1 Bulletin of the American Mathematical Society. New Series 1 Test 1 Top 1 Statistica Sinica 1 Annals of Mathematics and Artificial Intelligence 1 Journal of the Royal Statistical Society. Series B. Statistical Methodology 1 Philosophical Transactions of the Royal Society of London. Series A. Mathematical, Physical and Engineering Sciences 1 Communications in Nonlinear Science and Numerical Simulation 1 Statistical Modelling 1 REVSTAT 1 Statistical Methods and Applications 1 Journal of the Korean Statistical Society 1 International Journal of Biomathematics 1 Statistics and Its Interface 1 Journal of Probability and Statistics 1 Sankhyā. Series B 1 Pure and Applied Undergraduate Texts 1 Springer Series in Statistics 1 Statistik und ihre Anwendungen 1 Frontiers in Probability and the Statistical Sciences 1 Japanese Journal of Statistics and Data Science 1 Chapman & Hall/CRC The R Series 1 Chapman & Hall/CRC Computational Biology Series all top 5 Cited in 13 Fields 202 Statistics (62-XX) 114 Biology and other natural sciences (92-XX) 25 Numerical analysis (65-XX) 18 Computer science (68-XX) 10 Probability theory and stochastic processes (60-XX) 7 General and overarching topics; collections (00-XX) 3 Combinatorics (05-XX) 2 Operations research, mathematical programming (90-XX) 2 Systems theory; control (93-XX) 1 Ordinary differential equations (34-XX) 1 Classical thermodynamics, heat transfer (80-XX) 1 Game theory, economics, finance, and other social and behavioral sciences (91-XX) 1 Information and communication theory, circuits (94-XX) Citations by Year