Bioconductor swMATH ID: 4205 Software Authors: project, open development Description: Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 554 software packages, and an active user community. Bioconductor is also available as an Amazon Machine Image (AMI). Homepage: http://www.bioconductor.org/packages/release/BiocViews.html#___Software Programming Languages: R Operating Systems: UNIX, Windows, MacOS X Dependencies: R Keywords: Microarrays; Variants; Sequence Data; Annotation; High Throughput Assays; links; portal Related Software: R; gcrma; edgeR; limma; KEGG; DEseq; DESeq2; affy; ggplot2; Voom; flowCore; flowClust; BaySeq; mclust; CRAN; TopHat; igraph; lattice; multtest; ArrayExpress Cited in: 266 Documents Standard Articles 2 Publications describing the Software, including 2 Publications in zbMATH Year Statistics and data analysis for microarrays using R and Bioconductor. With CD-ROM. 2nd ed. Zbl 1279.62014Drăghici, Sorin 2012 Bioinformatics and computational biology solutions using R and Bioconductor. Zbl 1142.62100Gentleman, Robert (ed.); Carey, Vincent J. (ed.); Huber, Wolfgang (ed.); Irizarry, Rafael A. (ed.); Dudoit, Sandrine (ed.) 2005 all top 5 Cited by 703 Authors 8 Dudoit, Sandrine 6 Irizarry, Rafael A. 6 Van der Laan, Mark Johannes 5 Bickel, David R. 5 Nettleton, Dan 4 Aoshima, Makoto 4 Yata, Kazuyoshi 3 Chekouo, Thierry 3 Gentleman, Robert 3 Gottardo, Raphael 3 Holmes, Susan P. 3 Ibrahim, Joseph George 3 Keles, Sunduz 3 Li, Hongzhe 3 Liu, Peng 3 Robin, Stéphane 3 Rosenthal, Jeffrey S. 3 Smyth, Gordon K. 3 Speed, Terence Paul 3 Stingo, Francesco Claudio 3 Sun, Wei 3 Witten, Daniela M. 3 Zhao, Hongyu 3 Zhao, Sihai Dave 3 Zhou, Wen 2 Baladandayuthapani, Veerabhadran 2 Boettiger, Carl 2 Bühlmann, Peter 2 Carey, Vincent J. 2 Chen, Mengjie 2 Chen, Songxi 2 Cook, Dianne 2 Csárdi, Gábor 2 Dasgupta, Nairanjana 2 Drăghici, Sorin 2 Foulkes, Andrea S. 2 Gill, Ryan S. 2 Ho, Yen-Yi 2 Hornik, Kurt 2 Hothorn, Torsten 2 Huang, Haiyan 2 Huber, Wolfgang 2 Kalina, Jan 2 Kolaczyk, Eric D. 2 Lee, Juhee 2 Liang, Kun 2 Ligges, Uwe 2 Lun, Aaron T. L. 2 Marron, James Stephen 2 Mayrink, Vinicius Diniz 2 McGee, Monnie 2 Melnykov, Volodymyr 2 Mohammed, Shariq 2 Newton, Michael A. 2 Nguyen, Yet Tien 2 Nyangoma, Stephen O. 2 Parmigiani, Giovanni 2 Parrish, Rudolph S. 2 Rao, Arvind U. K. 2 Rashid, Naim U. 2 Risso, Davide 2 Ritz, Christian 2 Robinson, Mark D. 2 Sarkar, Deepayan 2 Streibig, Jens Carl 2 Sun, Shuying 2 Vannucci, Marina 2 Vingron, Martin 2 Willis, Amy D. 2 Wu, Baolin 2 Yang, Jinyoung 2 Yu, Xiaoqing 2 Zhou, Wen-Xin 2 Zhou, Yihui 1 Abdallah, Samer A. 1 Aberasturi, Dillon T. 1 Ahlquist, Paul 1 Airoldi, Edoardo M. 1 Akalin, Altuna 1 Alexander, Warren S. 1 Altman, Douglas G. 1 Amos, Christopher I. 1 Anand, Sonia 1 Andreassen, Bettina K. 1 Angelopoulos, Nicos 1 Archer, Kellie J. 1 Arshad, S. Hasan 1 Arslan, Olcay 1 Bacallado, Sergio 1 Bai, Jiawei 1 Bandara, Udika 1 Bar, Haim Y. 1 Basodi, Sunitha 1 Batool, Fatima 1 Bedrick, Edward J. 1 Beißbarth, Tim 1 Bembom, Oliver 1 Bengtsson, Henrik 1 Benjamini, Yuval 1 Beyene, Joseph ...and 603 more Authors all top 5 Cited in 78 Serials 29 Statistical Applications in Genetics and Molecular Biology 24 The Annals of Applied Statistics 14 Biometrics 14 Computational Statistics and Data Analysis 12 Computational Statistics 10 Journal of the American Statistical Association 7 Biometrical Journal 7 Use R! 6 Statistical Science 6 Journal of Applied Statistics 6 Journal of Computational and Graphical Statistics 6 Journal of Agricultural, Biological, and Environmental Statistics 5 Journal of Multivariate Analysis 5 Methods in Molecular Biology 4 The American Statistician 4 Statistics & Probability Letters 4 Statistical Analysis and Data Mining 4 Stat 3 Scandinavian Journal of Statistics 3 Journal of Statistical Planning and Inference 3 Methodology and Computing in Applied Probability 3 Computational Biology and Chemistry 3 Statistics and Computing 3 Journal of Theoretical Biology 2 Bulletin of Mathematical Biology 2 International Journal of Approximate Reasoning 2 Communications in Statistics. Theory and Methods 2 Statistical Papers 2 Statistica Sinica 2 Bernoulli 2 Biostatistics 2 Brazilian Journal of Probability and Statistics 2 Mathematical Biosciences and Engineering 2 Computational & Mathematical Methods in Medicine 2 Electronic Journal of Statistics 2 Chapman & Hall/CRC Biostatistics Series 2 Bayesian Analysis 2 Statistics in Medicine 2 Statistics for Biology and Health 2 Chapman & Hall/CRC Mathematical and Computational Biology Series 1 The Canadian Journal of Statistics 1 Computer Methods in Applied Mechanics and Engineering 1 Discrete Applied Mathematics 1 Mathematical Biosciences 1 Metrika 1 Physica A 1 The Annals of Statistics 1 Journal of Computational and Applied Mathematics 1 Kybernetika 1 Theoretical Population Biology 1 Sequential Analysis 1 Neural Networks 1 The Annals of Applied Probability 1 Communications in Statistics. Simulation and Computation 1 Journal of Statistical Computation and Simulation 1 Bulletin of the American Mathematical Society. New Series 1 Test 1 Top 1 Annals of Mathematics and Artificial Intelligence 1 Journal of the Royal Statistical Society. Series B. Statistical Methodology 1 Philosophical Transactions of the Royal Society of London. Series A. Mathematical, Physical and Engineering Sciences 1 Communications in Nonlinear Science and Numerical Simulation 1 Statistical Modelling 1 REVSTAT 1 Statistical Methods and Applications 1 Journal of the Korean Statistical Society 1 International Journal of Biomathematics 1 Statistics and Its Interface 1 Journal of Probability and Statistics 1 Sankhyā. Series A 1 Sankhyā. Series B 1 Pure and Applied Undergraduate Texts 1 Springer Series in Statistics 1 Statistik und ihre Anwendungen 1 Frontiers in Probability and the Statistical Sciences 1 Japanese Journal of Statistics and Data Science 1 Chapman & Hall/CRC The R Series 1 Chapman & Hall/CRC Computational Biology Series all top 5 Cited in 17 Fields 232 Statistics (62-XX) 117 Biology and other natural sciences (92-XX) 26 Numerical analysis (65-XX) 20 Computer science (68-XX) 10 Probability theory and stochastic processes (60-XX) 7 General and overarching topics; collections (00-XX) 4 Combinatorics (05-XX) 2 Operations research, mathematical programming (90-XX) 2 Systems theory; control (93-XX) 1 Linear and multilinear algebra; matrix theory (15-XX) 1 Ordinary differential equations (34-XX) 1 Algebraic topology (55-XX) 1 Mechanics of deformable solids (74-XX) 1 Classical thermodynamics, heat transfer (80-XX) 1 Statistical mechanics, structure of matter (82-XX) 1 Game theory, economics, finance, and other social and behavioral sciences (91-XX) 1 Information and communication theory, circuits (94-XX) Citations by Year