CODA swMATH ID: 4290 Software Authors: Martyn Plummer; Nicky Best; Kate Cowles; Karen Vines; Deepayan Sarkar; Russell Almond Description: R package coda: Output analysis and diagnostics for MCMC , Output analysis and diagnostics for Markov Chain Monte Carlo simulations. Provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain. Homepage: http://cran.r-project.org/web/packages/coda/index.html Programming Languages: R Operating Systems: UNIX, Windows, MacOS X Dependencies: R (≥ 2.14.0), lattice Keywords: Markov Chain Monte Carlo Related Software: R; JAGS; WinBUGS; BayesDA; BUGS; Stan; Rcpp; rjags; ggplot2; R2WinBUGS; boa; spBayes; Mcmcpack; Gibbsit; RcppArmadillo; OpenBUGS; mvtnorm; RStan; CRAN; lme4 Referenced in: 281 Publications all top 5 Referenced by 662 Authors 6 Gonzalez-Velasco, Miguel 6 Martínez, Rodrigo 5 Kohn, Robert J. 5 Tran, Minh Ngoc 5 Villani, Mattias 4 Amaral Turkman, Maria Antónia 4 Gutiérrez, Cristina 4 Komárek, Arnošt 4 Lesaffre, Emmanuel M. E. H. 4 Quiroz, Matias 4 Wagenmakers, Eric-Jan 3 Achcar, Jorge Alberto 3 Cancho, Vicente Garibay 3 Czado, Claudia 3 del Puerto, Inés Maria 3 Drovandi, Christopher C. 3 Farias, Rafael Bráz Azevedo 3 Fox, Jean-Paul 3 Frühwirth-Schnatter, Sylvia 3 Golightly, Andrew 3 Gómez-Rubio, Virgilio 3 Gronau, Quentin F. 3 Iglesias, Pilar Loreto 3 Jara, Alejandro 3 Matzke, Dora 3 McKinley, Trevelyan J. 3 Mengersen, Kerrie L. 3 Mirmostafaee, S. M. T. K. 3 Quintana, Fernando Andrés 3 Robert, Christian P. Robert 3 Schmidt, Alexandra Mello 3 Shang, Han Lin 2 Ahn, Jaeil 2 Arellano-Valle, Reinaldo Boris 2 Bivand, Roger S. 2 Boehm, Udo 2 Burda, Martin 2 Cai, Bo 2 Casella, George 2 Çetinkaya, Çağatay 2 Conesa, David 2 Cook, Alex R. 2 Curtis, S. McKay 2 Dang, Khue-Dung 2 Denis, Jean-Baptiste 2 Dey, Dipak Kumar 2 Elston, David A. 2 Fonseca, Thaís C. O. 2 Genç, Ali İ. 2 George, Saji 2 Gerland, Patrick 2 Ghosh, Malay 2 Ghosh, Sujit Kumar 2 Glas, Cees A. W. 2 Gonçalves, Kelly C. M. 2 Gruber, Stephen B. 2 Guan, Yawen 2 Hanson, Tim 2 Haran, Murali 2 Harris, Michael P. 2 Hawkins, Guy E. 2 Heathcote, Andrew 2 Heck, Daniel W. 2 Held, Leonhard 2 Holan, Scott H. 2 Holbrook, Andrew J. 2 Jacob, Pierre E. 2 Joukar, Abolfazl 2 Kastner, Gregor 2 Leisen, Fabrizio 2 Link, William A. 2 McClintock, Brett T. 2 Migon, Helio S. 2 Minuesa, Carmen 2 Molenberghs, Geert 2 Mondal, Anirban 2 Mukherjee, Bhramar 2 Nel, André E. 2 Ntzoufras, Ioannis 2 Patel, Trina 2 Paulino, Carlos Daniel Mimoso 2 Pebesma, Edzer J. 2 Raftery, Adrian E. 2 Ramezani, Masoumeh 2 Rao, Vinayak 2 Rizzo, Maria L. 2 Rossini, Luca 2 Rue, Håvard 2 Scutari, Marco 2 Suchard, Marc A. 2 Suzuki, Adriano K. 2 Tarantola, Claudia 2 Telesca, Donatello 2 Thall, Peter F. 2 Tovar, José Rafael 2 van den Hout, Ardo 2 Vidal, Ignacio 2 Wanless, Sarah 2 Wehrhahn, Claudia 2 Yiqi, Bao ...and 562 more Authors all top 5 Referenced in 83 Serials 21 Computational Statistics and Data Analysis 17 The Annals of Applied Statistics 16 Journal of Agricultural, Biological, and Environmental Statistics 14 Biometrics 14 Journal of Applied Statistics 14 Journal of Computational and Graphical Statistics 12 Statistical Modelling 12 Statistics and Computing 10 Computational Statistics 8 Psychometrika 7 Journal of Mathematical Psychology 7 Journal of Statistical Computation and Simulation 7 Bayesian Analysis 6 Biometrical Journal 5 Journal of the American Statistical Association 5 Journal of Statistical Planning and Inference 5 Communications in Statistics. Theory and Methods 4 Journal of Econometrics 4 Electronic Journal of Statistics 3 Journal of Mathematical Biology 3 Econometric Reviews 3 Communications in Statistics. Simulation and Computation 3 Test 3 Journal of Statistical Theory and Practice 3 Journal of Theoretical Biology 3 Use R! 2 Scandinavian Journal of Statistics 2 Applied Mathematical Modelling 2 Methodology and Computing in Applied Probability 2 Brazilian Journal of Probability and Statistics 2 Journal of Machine Learning Research (JMLR) 2 Statistical Methods and Applications 2 Revista de la Real Academia de Ciencias Exactas, Físicas y Naturales. Serie A: Matemáticas. RACSAM 2 Chilean Journal of Statistics 2 Institute of Mathematical Statistics Textbooks 2 Chapman & Hall/CRC Texts in Statistical Science Series 1 Computers & Mathematics with Applications 1 Computer Methods in Applied Mechanics and Engineering 1 Journal of Statistical Physics 1 Mathematical Biosciences 1 Automatica 1 Journal of Computational and Applied Mathematics 1 Journal of Multivariate Analysis 1 Rendiconti del Circolo Matemàtico di Palermo. Serie II 1 Journal of Sichuan University. Natural Science Edition 1 Insurance Mathematics & Economics 1 Statistics & Probability Letters 1 Revista Colombiana de Estadística 1 Journal of Classification 1 International Journal of Approximate Reasoning 1 Journal of Economic Dynamics & Control 1 Applied Mathematics Letters 1 European Journal of Operational Research 1 Journal of Biopharmaceutical Statistics 1 Statistical Papers 1 Statistica Sinica 1 Lifetime Data Analysis 1 Bernoulli 1 Revista Investigación Operacional 1 Journal of the Royal Statistical Society. Series B. Statistical Methodology 1 Communications de la Faculté des Sciences de l’Université d’Ankara. Séries A1. Mathematics and Statistics 1 Biostatistics 1 Applied Stochastic Models in Business and Industry 1 Advances and Applications in Statistics 1 Entropy 1 Behaviormetrika 1 Statistical Applications in Genetics and Molecular Biology 1 Journal of the Korean Statistical Society 1 Monographs on Statistics and Applied Probability 1 Advances in Data Analysis and Classification. ADAC 1 Computational & Mathematical Methods in Medicine 1 AStA. Advances in Statistical Analysis 1 Mathematical Geosciences 1 Sankhyā. Series A 1 Journal of Time Series Econometrics 1 Springer Series in Statistics 1 Dependence Modeling 1 SIAM/ASA Journal on Uncertainty Quantification 1 Advances in Data Science and Adaptive Analysis 1 Graduate Texts in Physics 1 Pratique R 1 Chapman & Hall/CRC The R Series 1 Chapman & Hall/CRC Computer Science & Data Analysis Series all top 5 Referenced in 16 Fields 266 Statistics (62-XX) 74 Numerical analysis (65-XX) 32 Probability theory and stochastic processes (60-XX) 30 Biology and other natural sciences (92-XX) 13 Game theory, economics, finance, and other social and behavioral sciences (91-XX) 6 Computer science (68-XX) 6 Operations research, mathematical programming (90-XX) 5 Geophysics (86-XX) 2 Number theory (11-XX) 1 General and overarching topics; collections (00-XX) 1 Combinatorics (05-XX) 1 Dynamical systems and ergodic theory (37-XX) 1 Global analysis, analysis on manifolds (58-XX) 1 Statistical mechanics, structure of matter (82-XX) 1 Systems theory; control (93-XX) 1 Information and communication theory, circuits (94-XX) Referencing Publications by Year