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AGB

swMATH ID: 43154
Software Authors: Alla Mikheenko, Mikhail Kolmogorov
Description: AGB - Assembly Graph Browser: interactive visualization of assembly graphs. Currently, most genome assembly projects focus on contigs and scaffolds rather than assembly graphs that provide a more comprehensive representation of an assembly. Since interactive visualization of large assembly graphs remains an open problem, we developed an Assembly Graph Browser (AGB) tool that visualizes large assembly graphs, extending the functionality of previously developed visualization approaches. Assembly Graph Browser includes a number of novel functions including repeat analysis, construction of the contracted assembly graphs (i.e. the graphs obtained by collapsing a selected set of edges) and a new approach to visualizing large assembly graphs. Availability and implementation: http://www.github.com/almiheenko/AGB.
Homepage: https://academic.oup.com/bioinformatics/article/35/18/3476/5306331
Source Code:  https://github.com/almiheenko/AGB
Related Software: Asgan; Sibelia; CAMSA; hybridSPAdes; GTED; HINGE; Canu; Bandage; Unicycler; PathRacer; CYNTENATOR; i-ADHoRe; Minimap2; dipSPAdes; SPAdes
Cited in: 1 Document

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