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CAMSA

swMATH ID: 43161
Software Authors: Sergey S Aganezov; Max A Alekseyev
Description: CAMSA - is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license. Main CAMSA features: works with any number of scaffold assemblies in de-novo non-progressive fashion; allows to simultaniously work with scaffold assemblies obtained from any in silico and in vitro techniques, supporting multiple existing formats via built-in converters; creates an extensive report with several comparative quality metrics (both on assembly level and on the level of individual assembly points); constructs a merged combined scaffold assembly; provides an interactive framework for a visual comparative analysis of the given assemblies. CAMSA is developed using Python programming language and is compatible with both Python2 (2.7+) and Python3 (3.5+). This means CAMSA can be run on any modern operating system properly.
Homepage: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1919-y
Source Code:  https://github.com/compbiol/CAMSA
Dependencies: Python
Related Software: Asgan; Sibelia; hybridSPAdes; GTED; HINGE; Canu; Bandage; Unicycler; AGB; PathRacer; CYNTENATOR; i-ADHoRe; Minimap2; dipSPAdes; SPAdes
Cited in: 1 Document

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