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spatstat

swMATH ID: 4429
Software Authors: Adrian Baddeley, Rolf Turner, Ege Rubak; et al.
Description: spatstat: Spatial Point Pattern analysis, model-fitting, simulation, tests , A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).
Homepage: http://cran.r-project.org/web/packages/spatstat/
Source Code:  https://github.com/cran/spatstat
Dependencies: R (≥ 2.14.0), stats, graphics, utils, mgcv, deldir (≥0.0-10)
Related Software: R; pyuvdata; spatial; GET; SANET; ggplot2; KernSmooth; spBayes; INLA; R-Geo; Splancs; RandomFields; lgcp; raster; Python; PtProcess; stpp; CRAN; MASS (R); gamair
Cited in: 274 Documents

Standard Articles

2 Publications describing the Software Year
Hybrids of Gibbs Point Process Models and Their Implementation Link
Adrian Baddeley; Rolf Turner; Jorge Mateu; Andrew Bevan
2013
spatstat: An R Package for Analyzing Spatial Point Patterns Link
Adrian Baddeley; Rolf Turner
2005
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Cited by 419 Authors

26 Baddeley, Adrian John
24 Mateu, Jorge
13 Moller, Jesper
12 Coeurjolly, Jean-François
11 Nair, Gopalan M.
10 Lavancier, Frédéric
10 Waagepetersen, Rasmus Plenge
9 Dvořák, Jiři
8 Bardenet, Rémi
8 Rubak, Ege
8 Turner, Rolf
7 Davies, Tilman M.
6 van Lieshout, Marie-Colette N. M.
5 Biscio, Christophe Ange Napoléon
5 Ceyhan, Elvan
5 Cronie, Ottmar
5 González-Manteiga, Wenceslao
5 Hazelton, Martin L.
5 Mrkvička, Tomáš
5 Warton, David I.
4 Ghorbani, Mohammad
4 Guan, Yongtao
4 Hardy, Adrien
4 Jalilian, Abdollah H.
4 Loh, Ji Meng
4 McSwiggan, Greg
4 Micheas, Athanasios Christou
4 Moradi, M. Mehdi
4 Poinas, Arnaud
4 Prokešová, Michaela
4 Schuhmacher, Dominic
3 Adelfio, Giada
3 Bivand, Roger S.
3 Briz-Redón, Álvaro
3 Choiruddin, Achmad
3 Christensen, Heidi Søgaard
3 Christoffersen, Andreas Dyreborg
3 D’Angelo, Nicoletta
3 Decreusefond, Laurent
3 Desolneux, Agnès
3 Flint, Ian
3 Fuentes-Santos, Isabel
3 Galerne, Bruno
3 Gómez-Rubio, Virgilio
3 González, Jonatan A.
3 Illian, Janine B.
3 Milne, Robin K.
3 Moradi, Mehdi
3 Myllymäki, Mari
3 O’Reilly, Eliza
3 Pebesma, Edzer J.
3 Privault, Nicolas
3 Rakshit, Suman
3 Stoyan, Dietrich Kurt
3 Svane, Anne Marie
3 Vihrs, Ninna
2 Ba, Ismaïla
2 Baake, Michael
2 Baccelli, François Louis
2 Bar-Hen, Avner
2 Beneš, Viktor
2 Bonneu, Florent
2 Borgoni, Riccardo
2 Borrajo, M. I.
2 Chadœuf, Joël
2 Chainais, Pierre
2 Chang, Ya-Mei
2 Chen, Jiaxun
2 Cuevas-Pacheco, Francisco
2 Daniel, Jeffrey
2 Ebner, Bruno
2 Flagg, Kenneth A.
2 Guglielmi, Alessandra
2 Hahn, Ute Christine Friederike
2 Hardegen, Andrew
2 Heaton, Matthew J.
2 Hoegh, Andrew
2 Horrocks, Julie
2 Klatt, Michael Andreas
2 Lachièze-Rey, Raphaël
2 Launay, Claire
2 Lautensack Redenbach, Claudia
2 Lawrence, Thomas
2 Lawson, Andrew B.
2 Letué, Frédérique
2 Lledó, Josep
2 Maltamo, Matti
2 Martínez Miranda, María Dolores
2 Mary, Xavier
2 Mecke, Klaus R.
2 Mehtätalo, Lauri
2 Monestiez, Pascal
2 Packalen, Petteri
2 Pavia, Jose Manuel
2 Penttinen, Antti
2 Rasmussen, Jakob Gulddahl
2 Renner, Ian W.
2 Rodriguez-Cortes, Francisco Javier
2 Särkkä, Aila
2 Schoenberg, Frederic Paik
...and 319 more Authors
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Cited in 85 Serials

17 Scandinavian Journal of Statistics
15 Computational Statistics and Data Analysis
14 Statistics and Computing
12 The Annals of Applied Statistics
10 Electronic Journal of Statistics
9 Annals of the Institute of Statistical Mathematics
9 Australian & New Zealand Journal of Statistics
7 International Statistical Review
7 Journal of Statistical Computation and Simulation
7 Journal of Computational and Graphical Statistics
7 Stat
6 Biometrics
6 Journal of Applied Probability
6 Bernoulli
6 Journal of Applied Statistics
6 Methodology and Computing in Applied Probability
6 Journal of Agricultural, Biological, and Environmental Statistics
6 Journal of Theoretical Biology
5 Advances in Applied Probability
5 Journal of the American Statistical Association
4 Computational Statistics
4 Communications in Statistics. Simulation and Computation
3 Journal of Statistical Physics
3 Statistica Neerlandica
3 Statistical Science
3 Test
3 Applied and Computational Harmonic Analysis
3 Advances in Data Analysis and Classification. ADAC
3 AStA. Advances in Statistical Analysis
2 The Canadian Journal of Statistics
2 The Annals of Statistics
2 Biometrical Journal
2 Journal of Statistical Planning and Inference
2 Kybernetika
2 Insurance Mathematics & Economics
2 The Annals of Applied Probability
2 Applications of Mathematics
2 Electronic Journal of Probability
2 European Series in Applied and Industrial Mathematics (ESAIM): Probability and Statistics
2 Journal of the Royal Statistical Society. Series B. Statistical Methodology
2 SORT. Statistics and Operations Research Transactions
2 Journal of Physics A: Mathematical and Theoretical
2 Use R!
1 The American Statistician
1 Communications in Mathematical Physics
1 Journal of Fluid Mechanics
1 Journal of Mathematical Analysis and Applications
1 Mathematical Biosciences
1 Metrika
1 Physica A
1 Biometrika
1 South African Statistical Journal
1 Statistics & Probability Letters
1 Physica D
1 Constructive Approximation
1 Journal of Integral Equations and Applications
1 Stochastic Processes and their Applications
1 Journal of Mathematical Imaging and Vision
1 Statistical Papers
1 Journal of Computational Neuroscience
1 European Mathematical Society Newsletter
1 Far East Journal of Theoretical Statistics
1 Philosophical Transactions of the Royal Society of London. Series A. Mathematical, Physical and Engineering Sciences
1 Image Analysis & Stereology
1 Brazilian Journal of Probability and Statistics
1 Scandinavian Actuarial Journal
1 Statistical Modelling
1 Journal of Machine Learning Research (JMLR)
1 The College Mathematics Journal
1 SIAM Journal on Imaging Sciences
1 Mathematical Geosciences
1 Statistics and Its Interface
1 Vestnik Yuzhno-Ural’skogo Gosudarstvennogo Universiteta. Seriya Matematicheskoe Modelirovanie i Programmirovanie
1 Sankhyā. Series A
1 European Actuarial Journal
1 Bayesian Analysis
1 Epidemiologic Methods
1 The Scientific World Journal. Probability and Statistics
1 Modern Stochastics. Theory and Applications
1 European Series in Applied and Industrial Mathematics (ESAIM): Proceedings and Surveys
1 Journal of Applied and Computational Topology
1 Chapman & Hall/CRC Interdisciplinary Statistics Series
1 Chapman & Hall/CRC The R Series
1 SN Operations Research Forum
1 Foundations of Data Science

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