PLINK swMATH ID: 4581 Software Authors: Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D et al Description: PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results. Homepage: http://zzz.bwh.harvard.edu/plink/ Programming Languages: C/C++ Operating Systems: Windows, MS-Dos UNIX, Linux, Solaris, MacOS X Keywords: large-scale analyses Related Software: R; GCTA; Eigenstrat; STRUCTURE; Haploview; pi-MASS; Bioconductor; igraph; GenABEL; GWAS Catalog; TATES; MaCH; Lmertest; SNPStats; Postgwas; SNPassoc; Rcpp; qqman; R/qtl; Matlab Cited in: 58 Publications all top 5 Cited by 164 Authors 4 Liu, Jin 3 Lin, Xihong 3 Liu, Zhonghua 3 Yang, Can 2 Balding, David Joseph 2 Huang, Jian 2 Humberstone, Lloyd 2 Hung, Hung 2 Jiao, Yuling 1 Achaz, Guillaume 1 Alexandrov, Nickolai N. 1 Aminafshar, Mehdi 1 Amiri, Saeid 1 An, Baiguo 1 Anderson, Eric C. 1 Ashcroft, Michael 1 Astle, William 1 Bae, Harold 1 Barnett, Ian J. 1 Bogdan, Małgorzata 1 Bowden, Jack 1 Briollais, Laurent 1 Bryc, Katarzyna 1 Bryc, Włodzimierz 1 Brzyski, Damian 1 Cai, Mingxuan 1 Cao, Jiguo 1 Carmi, Shai 1 Castro, Bruno M. 1 Cesar, Jonatas 1 Chen, Penweng 1 Clarke, Bertrand S. 1 Clarke, Jennifer Lynn 1 Cook, Roy T. 1 Crawford, Lorin 1 Crossett, Andrew 1 Dai, Mingwei 1 Delgado, Alberto Santos 1 Devlin, Bernie 1 Dickhaus, Thorsten 1 Dobra, Adrian 1 Druet, Tom 1 Ertola, Rodolfo C. 1 Flaxman, Seth R. 1 Foulkes, Andrea S. 1 Friedlander, Matt 1 Gao, Yong 1 Garson, James W. 1 Gautier, Mathieu 1 Gawryluk, Jodie 1 Gazal, Steven 1 Génin, Emmanuelle 1 Gossmann, Alexej 1 Guarracino, Mario Rosario 1 Gupta, Mayetri 1 Hebebrand, Johannes 1 Hemani, Gibran 1 Honarvar, Mahmood 1 Hu, Yanling 1 Huang, Suyun 1 Huang, Yuanjie 1 Humberstone, I. L. 1 Hünemeier, Tábita 1 Jakaitienė, Audronė 1 Jiang, Bo 1 Jiang, Yonghua 1 Jin, Bangti 1 Kanetsky, Peter A. 1 Kang, Guolian 1 Kashan, Nasser Emam Jomeh 1 Keith, Jonathan M. 1 Kerdoncuff, Elise 1 King, Ross D. 1 Klei, Lambertus 1 Kong, Dehan 1 Kong, Efang 1 Kozlitina, Julia 1 Kubatko, Laura Salter 1 Kuo, Po-Hsiu 1 Lambert, Amaury 1 Lee, Ann B. 1 Lee, Seunggeun 1 Lemes, Renan B. 1 Leonardi, Florencia 1 Leutenegger, Anne-Louise 1 Li, Weidong 1 Lin, Yuting 1 Linnen, Catherine R. 1 Liu, Jia-Rou 1 Liu, Jinnan 1 Liu, Yaowu 1 Lu, Xiliang 1 Luan, Jian’an 1 Mackay, Ian 1 Massam, Helene M. 1 Mikhchi, Abbas 1 Milne, Peter 1 Ming, Jingsi 1 Mitra, Nandita 1 Mo, Zengnan ...and 64 more Authors all top 5 Cited in 25 Serials 6 Journal of Philosophical Logic 6 Theoretical Population Biology 5 Statistical Applications in Genetics and Molecular Biology 4 Biometrics 4 Journal of the American Statistical Association 4 The Annals of Applied Statistics 3 Journal of Theoretical Biology 2 The Annals of Statistics 2 Studia Logica 2 Statistical Science 2 Statistica Sinica 2 Computational & Mathematical Methods in Medicine 2 Journal of Computational and Graphical Statistics 2 Methods in Molecular Biology 1 Journal of Multivariate Analysis 1 Synthese 1 Theoria 1 Statistics & Probability Letters 1 Machine Learning 1 Computational Statistics and Data Analysis 1 Bernoulli 1 Logic and Logical Philosophy 1 Journal of Probability and Statistics 1 Bayesian Analysis 1 Use R! all top 5 Cited in 10 Fields 37 Statistics (62-XX) 29 Biology and other natural sciences (92-XX) 10 Mathematical logic and foundations (03-XX) 4 Numerical analysis (65-XX) 2 Probability theory and stochastic processes (60-XX) 1 General and overarching topics; collections (00-XX) 1 Linear and multilinear algebra; matrix theory (15-XX) 1 Computer science (68-XX) 1 Quantum theory (81-XX) 1 Game theory, economics, finance, and other social and behavioral sciences (91-XX) Citations by Year