sbtoolbox swMATH ID: 7391 Software Authors: Henning Schmidt; Mats Jirstrand Description: Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology. We present a Systems Biology Toolbox for the widely used general purpose mathematical software MATLAB. The toolbox offers systems biologists an open and extensible environment, in which to explore ideas, prototype and share new algorithms, and build applications for the analysis and simulation of biological and biochemical systems. Additionally it is well suited for educational purposes. The toolbox supports the Systems Biology Markup Language (SBML) by providing an interface for import and export of SBML models. In this way the toolbox connects nicely to other SBML-enabled modelling packages. Models are represented in an internal model format and can be described either by entering ordinary differential equations or, more intuitively, by entering biochemical reaction equations. The toolbox contains a large number of analysis methods, such as deterministic and stochastic simulation, parameter estimation, network identification, parameter sensitivity analysis and bifurcation analysis. Homepage: http://www.sbtoolbox.org/ Dependencies: Matlab Related Software: Matlab; COPASI; SBML-SAT; libSBML; Sbmltoolbox; SymPy; Python; PottersWheel; SensSB; ParameterEstimation.jl; Data2Dynamics; DifferentialEquations.jl; OSCAR; SIAN; MEIGO; HomotopyContinuation; msolve; TaylorSeries.jl; DAISY; AMIGO Cited in: 12 Documents all top 5 Cited by 40 Authors 2 Chaplain, Mark A. J. 1 Álvarez-Buylla Roces, María Elena 1 Andasari, Vivi 1 Banga, Julio R. 1 Boghigian, Brett A. 1 Broeckhove, Jan 1 Dávila-Velderrain, José 1 Domínguez-Hüttinger, Elisa 1 Doyle, Francis Joseph III 1 Draelants, Delphine 1 Gunawan, Rudiyanto 1 Hubbard, Stephen F. 1 Khoshnaw, Sarbaz H. A. 1 Kłosiewicz, Przemysław 1 Lai, Xin 1 Landmane, Katrina 1 Laranjeira, Simão 1 Lee, Kyongbum 1 Liu, Sijia 1 Liu, Weijiu 1 Martínez García, Juan Carlos 1 Martínez-Sánchez, Mariana Esther 1 Matzavinos, Anastasios 1 Nikolov, Svetoslav G. 1 Orlowski, Piotr 1 Palace, Jacqueline 1 Payne, Stephen J. 1 Perumal, Thanneer M. 1 Pfeifer, Blaine A. 1 Preedy, Katharine F. 1 Rodríguez-Fernández, María 1 Sahle, Sven 1 Schofield, Pietà G. 1 Stalidzans, Egils 1 Sulins, Jurijs 1 Symmonds, Mkael 1 Vanroose, Wim 1 Vera, Julio 1 Wolkenhauer, Olaf 1 Wu, Yan all top 5 Cited in 7 Serials 4 Journal of Theoretical Biology 2 Mathematical Biosciences 1 International Journal of Robust and Nonlinear Control 1 Discrete and Continuous Dynamical Systems 1 Computational Biology and Chemistry 1 Mathematical Modelling of Natural Phenomena 1 Advances in Experimental Medicine and Biology Cited in 5 Fields 12 Biology and other natural sciences (92-XX) 2 Ordinary differential equations (34-XX) 2 Systems theory; control (93-XX) 1 Dynamical systems and ergodic theory (37-XX) 1 Calculus of variations and optimal control; optimization (49-XX) Citations by Year