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RladyBug

swMATH ID: 810
Software Authors: Michael Hoehle, Ulrike Feldmann, Sebastian Meyer
Description: RLadyBug is a R package for the analysis of Infectious Diseases using Stochastic Epidemic Models. The package consists of two independent tools to analyse infectious disease surveillance data: 1. Stochastic Susceptible-Exposed-Infectious-Recovered (SEIR) models are treated by the java program LadyBug, i.e. for use of this functionality of the package a java virtual machine has to be installed on your computer. 2. Multivariate temporal counting processes for a fixed set of locations are modeled through additive-multiplicative conditional intensities (fitted by the ’twinSIR’ function).
Homepage: http://www.statistik.lmu.de/~hoehle/software/RLadyBug/
Operating Systems: Linux, Windows, MacOS X
Dependencies: R (≥ 2.6.0), methods, rJava (≥ 0.5), coda
Keywords: SIR model; SEIR model; stochastic modelling; MCMC; S4; R
Related Software: R; amei; CODA; Cobra; Stan; R0; rstan; EpiEstim; Surveillance; tscount; acp; EpiModel; epinet; rstanarm; epidemia; stochasticGEM; epiR; epibasix; epicalc; Epi
Cited in: 4 Publications

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