GeneSrF swMATH ID: 8254 Software Authors: Ramón Díaz-Uriarte; Sara Alvarez de Andrés Description: GeneSrF: gene selection with random forests (v. 20070524). GeneSrF is a web tool for gene selection in classification problems that uses random forest. Two approaches for gene selection are used: one is targeted towards identifying small, non-redundant sets of genes that have good predictive performance. The second is a more heuristic graphical approach that can be used to identify large sets of genes (including redundant genes) related to the outcome of interest. The first approach is described in detail in this paper. The R code is available as an R package from CRAN or from this link. For further details see the help. Homepage: http://genesrf.bioinfo.cnio.es/ Related Software: R; randomForest; UCI-ml; varSelRF; ElemStatLearn; party; C4.5; caret; obliqueRF; BartPy; rda; Boruta; FSelector; ranger; Scikit; glmnet; AdaBoost.MH; randomSurvivalForest; AppliedPredictiveModeling; fda (R) Cited in: 57 Publications all top 5 Cited by 143 Authors 4 Scornet, Erwan 3 Biau, Gérard 3 Hapfelmeier, Alexander 3 Ulm, Kurt W. 3 Ziegler, Andreas 2 Gregorutti, Baptiste 2 Ishwaran, Hemant 2 König, Inke R. 2 Kruppa, Jochen 2 Liu, Yufeng 2 Michel, Bertrand 2 Saint-Pierre, Philippe 2 Tsai, Miao-Yu 1 Apperson-Hansen, Carolyn 1 Archer, Kellie J. 1 Athey, Susan 1 Ayyad, Sarah M. 1 Baraud, Yannick 1 Barrieu, Pauline M. 1 Ben Ishak, Anis 1 Binder, Harald 1 Blackstone, Eugene H. 1 Bleich, Justin 1 Booth, Ash 1 Boulesteix, Anne-Laure Isabeau 1 Bühlmann, Peter 1 Celik, Ender 1 Chang, Ching-Wei 1 Chang, Hsueh-Wei 1 Chen, Chun-Houh 1 Chen, Xi 1 Chen, YiNing 1 Chuang, Li-Yeh 1 Coussement, Kristof 1 Cutler, Adele 1 De Bock, Koen W. 1 De Niz, Carlos 1 De Smedt, Johannes 1 Diener, Hans-Christian 1 Ding, Shanshan 1 Duroux, Roxane 1 El Haouij, Neska 1 Fan, Fangyun 1 Friedberg, Rina 1 Genuer, Robin 1 George, Edward I. 1 Gerding, Enrico H. 1 Ghattas, Badih 1 Ghozi, Raja 1 Giraud, Christophe 1 Gonçalves, Marcos André 1 Guo, Liang 1 Hernández, Belinda 1 Holste, Theresa 1 Hooker, Giles 1 Hothorn, Torsten 1 Huang, Chien-Hsun 1 Huang, Shuiping 1 Huet, Sylvie 1 Jaïdane, Mériem 1 Jain, Yashita 1 Janitza, Silke 1 Jensen, Shane T. 1 Kapelner, Adam 1 Kim, Ilmun 1 Kimes, Ryan V. 1 Kogalur, Udaya B. 1 Kohler, Michael 1 Labib, Labib M. 1 Lee, Ann B. 1 Lee, Mei-Hsien 1 Lee, Thomas C. M. 1 Lei, Jing 1 Li, Na 1 Li, Yunxian 1 Lin, Jinguan 1 Liu, Jianya 1 Liu, Li 1 Loecher, Markus 1 Lohr, Sharon L. 1 Lopes, Miles E. 1 Loynes, Christopher 1 Lu, Ruodan 1 Makariou, Despoina 1 Malley, James D. 1 McGroarty, Frank 1 Mendez, Guillermo 1 Mentch, Lucas K. 1 Minn, Andy J. 1 Mišić, Velibor V. 1 Nielsen, Mikkel Slot 1 Nürnberg, Gerd 1 Ouenniche, Jamal 1 Pal, Ranadip 1 Pan, Jia-Chiun 1 Papacharalampous, Georgia 1 Pappu, Vijay 1 Pardalos, Panos M. 1 Parnell, Andrew C. 1 Pennington, Stephen R. ...and 43 more Authors all top 5 Cited in 36 Serials 6 Computational Statistics and Data Analysis 5 Biometrical Journal 4 Statistics and Computing 3 Computational & Mathematical Methods in Medicine 3 The Annals of Applied Statistics 2 Computational Statistics 2 Advances in Data Analysis and Classification. ADAC 2 Electronic Journal of Statistics 2 Algorithms 1 The Annals of Statistics 1 Information Sciences 1 Journal of Multivariate Analysis 1 Operations Research 1 Insurance Mathematics & Economics 1 International Journal of Parallel Programming 1 Annals of Operations Research 1 Communications in Statistics. Simulation and Computation 1 Communications in Statistics. Theory and Methods 1 Journal of Statistical Computation and Simulation 1 Annales de l’Institut Henri Poincaré. Probabilités et Statistiques 1 Test 1 Journal of Nonparametric Statistics 1 European Series in Applied and Industrial Mathematics (ESAIM): Probability and Statistics 1 Biostatistics 1 Quantitative Finance 1 Statistical Applications in Genetics and Molecular Biology 1 Computational Biology and Chemistry 1 Statistical Methods and Applications 1 Statistical Analysis and Data Mining 1 International Journal of Biomathematics 1 Statistics Surveys 1 Science China. Mathematics 1 Journal of Computational and Graphical Statistics 1 Symmetry 1 Journal de la Société Française de Statistique & Revue de Statistique Appliquée 1 SIAM Journal on Mathematics of Data Science all top 5 Cited in 12 Fields 51 Statistics (62-XX) 25 Computer science (68-XX) 10 Biology and other natural sciences (92-XX) 3 Numerical analysis (65-XX) 2 History and biography (01-XX) 2 Combinatorics (05-XX) 2 Game theory, economics, finance, and other social and behavioral sciences (91-XX) 1 Harmonic analysis on Euclidean spaces (42-XX) 1 Probability theory and stochastic processes (60-XX) 1 Astronomy and astrophysics (85-XX) 1 Operations research, mathematical programming (90-XX) 1 Information and communication theory, circuits (94-XX) Citations by Year