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Celldesigner

swMATH ID: 9942
Software Authors: Funahashi, A., Morohashi, M., Kitano, H., Tanimura, N.
Description: Celldesigner: a process diagram editor for gene-regulatory and biochemical networks. CellDesigner is a structured diagram editor for drawing gene-regulatory and biochemical networks. Networks are drawn based on the process diagram, with graphical notation system proposed by Kitano, and are stored using the Systems Biology Markup Language (SBML), a standard for representing models of biochemical and gene-regulatory networks. Networks are able to link with simulation and other analysis packages through Systems Biology Workbench (SBW). CellDesigner supports simulation and parameter scan by an integration with SBML ODE Solver, SBML Simulation Core and Copasi. By using CellDesigner, you can browse and modify existing SBML models with references to existing databases, simulate and view the dynamics through an intuitive graphical interface.
Homepage: http://www.celldesigner.org/
Related Software: KEGG; MetaCyc; BIOCHAM; Reactome; BioModels; COPASI; GNA; PEPA; Bio-PEPA; Metatool; Cytoscape; Bio-SPICE; TABASCO; lpSolve; SUNDIALS; SciPy; ProMoT; SynBioSS; BioJADE; SCAMP
Cited in: 17 Publications

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