Celldesigner swMATH ID: 9942 Software Authors: Funahashi, A., Morohashi, M., Kitano, H., Tanimura, N. Description: Celldesigner: a process diagram editor for gene-regulatory and biochemical networks. CellDesigner is a structured diagram editor for drawing gene-regulatory and biochemical networks. Networks are drawn based on the process diagram, with graphical notation system proposed by Kitano, and are stored using the Systems Biology Markup Language (SBML), a standard for representing models of biochemical and gene-regulatory networks. Networks are able to link with simulation and other analysis packages through Systems Biology Workbench (SBW). CellDesigner supports simulation and parameter scan by an integration with SBML ODE Solver, SBML Simulation Core and Copasi. By using CellDesigner, you can browse and modify existing SBML models with references to existing databases, simulate and view the dynamics through an intuitive graphical interface. Homepage: http://www.celldesigner.org/ Related Software: KEGG; MetaCyc; BIOCHAM; Reactome; BioModels; COPASI; GNA; PEPA; Bio-PEPA; Metatool; Cytoscape; Bio-SPICE; TABASCO; lpSolve; SUNDIALS; SciPy; ProMoT; SynBioSS; BioJADE; SCAMP Cited in: 17 Publications all top 5 Cited by 52 Authors 3 Maggiolo-Schettini, Andrea 3 Milazzo, Paolo 3 Pardini, Giovanni 2 Hinze, Thomas 1 Albrecht, Mario 1 Bacic, Antony 1 Baral, Chitta R. 1 Barbuti, Roberto 1 Basu, Kalyan 1 Binsl, Thomas W. 1 Dampier, William 1 Das, Sajal Kumar 1 Dittrich, Peter 1 Duintjer Tebbens, Jurjen 1 Errami, Hassan 1 Fages, François 1 Faßler, Raffael 1 Ghosh, Preetam 1 Ghosh, Samik 1 Hauschild, Anne-Christin 1 Hettling, Hannes 1 Jack, John 1 Kerren, Andreas 1 Klein, Karsten 1 Kohlbacher, Oliver 1 Kulasiri, Don 1 Lenser, Thorsten 1 Lepri, Daniela 1 Likić, Vladimir A. 1 Lithgow, Trevor 1 Martinez, Thierry 1 Matonoha, Ctirad 1 Matsumaru, Naoki 1 Matthios, Andreas 1 Mcconville, Malcolm J. 1 Mohammadnejad, Javad 1 Mutzel, Petra 1 Papáček, Štěpán 1 Paul, Wolfgang 1 Păun, Andrei 1 Rama, Aureliano 1 Razaghi-Moghadam, Zahra 1 Rosenblueth, David A. 1 Samal, Satya Swarup 1 Schreiber, Falk 1 Shafaghati, Leila 1 Soliman, Sylvain 1 Tozeren, Aydin 1 Van Beek, Johannes H. G. M. 1 Weber, Andreas Günter 1 Wybrow, Michael 1 Xie, Zhi all top 5 Cited in 8 Serials 2 Journal of Theoretical Biology 1 Discrete Applied Mathematics 1 Bulletin of Mathematical Biology 1 Theoretical Computer Science 1 Applications of Mathematics 1 Philosophical Transactions of the Royal Society of London. Series A. Mathematical, Physical and Engineering Sciences 1 Journal of Applied Logic 1 all top 5 Cited in 6 Fields 16 Biology and other natural sciences (92-XX) 8 Computer science (68-XX) 2 Ordinary differential equations (34-XX) 1 Statistics (62-XX) 1 Numerical analysis (65-XX) 1 Systems theory; control (93-XX) Citations by Year