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Found 137 Software Packages (Results 1–100)

Matlab

Cited in 14,646 Documents (1982–2025)
Software Authors: MathWorks Inc
Related Software: Simulink; LMI toolbox; MATLAB ODE suite; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX); …

R

Cited in 10,120 Documents (1978–2024)
Software Authors: Wickham, Hadley; Gentleman, Robert; Ihaka, Ross; Chambers, John M.; Venables, William N.; Ripley, Brian D.
Related Software: CRAN; ggplot2; SAS; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …

Mathematica

Cited in 6,814 Documents (1986–2024)
Software Authors: Research, Wolfram
Related Software: Maple; Matlab; R; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX); …

Maple

Cited in 5,473 Documents (1983–2024)
Software Authors: Waterloo Maple Inc.
Related Software: Mathematica; Matlab; Magma; …
Main Fields: Number theory (11-XX); Ordinary differential equations (34-XX); Partial differential equations (35-XX); …

OEIS

Cited in 5,516 Documents (1973–2025)
Software Authors: Sloane, Neil J. A.; The OEIS Foundation Inc.
Related Software: SageMath; Mathematica; DLMF; …
Main Fields: Combinatorics (05-XX); Number theory (11-XX); Linear and multilinear algebra; matrix theory (15-XX); …

GitHub

Cited in 5,222 Documents (2010–2024)
Software Authors: github
Related Software: R; Adam; Matlab; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

UCI-ml

Cited in 3,175 Documents (1995–2024)
Software Authors: Aha, David; Murphy, Patrick; Merz, Christopher; Keogh, Eamonn; Blake, Cathy; Hettich, Seth; Newman, David
Related Software: C4.5; LIBSVM; R; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

DLMF

Cited in 3,926 Documents (2000–2024)
Software Authors: Lozier, Daniel W.
Related Software: Mathematica; Matlab; OEIS; …
Main Fields: Special functions (33-XX); Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); …

Python

Cited in 1,601 Documents (1991–2025)
Software Authors: Rossum, Guido van
Related Software: SciPy; NumPy; Matplotlib; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

ElemStatLearn

Cited in 1,896 Documents (2001–2024)
Software Authors: Halvorsen, Kjetil
Related Software: R; UCI-ml; PRMLT; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

LAPACK

Cited in 1,787 Documents (1988–2024)
Software Authors: LAPACK team: lapack@cs.utk.edu
Related Software: BLAS; ScaLAPACK; Matlab; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX); Computer science (68-XX); …

BayesDA

Cited in 1,642 Documents (1997–2024)
Software Authors: Halvorsen, Kjetil
Related Software: R; WinBUGS; Stan; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …

PRMLT

Cited in 1,440 Documents (2006–2024)
Software Authors: Bishop, C.
Related Software: UCI-ml; ElemStatLearn; Adam; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

SciPy

Cited in 884 Documents (2005–2024)
Software Authors: Jones, E.; Oliphant, T.; Peterson, P.
Related Software: Python; NumPy; Matplotlib; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

Scikit

Cited in 791 Documents (2011–2024)
Software Authors: Pedregosa, Fabian; Varoquaux, Gaël; Gramfort, Alexandre; Michel, Vincent; Thirion, Bertrand; Grisel, Olivier; Blondel, Mathieu; Prettenhofer, Peter; Weiss, Ron; Dubourg, Vincent; Vanderplas, Jake; Passos, Alexandre; Cournapeau, David; Brucher, Matthieu; Perrot, Matthieu; Duchesnay, Édouard
Related Software: Python; SciPy; TensorFlow; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

Julia

Cited in 725 Documents (2014–2024)
Software Authors: Bezanson, J.; Karpinski, S.; Shah, V. B.; Edelman, A.
Related Software: GitHub; JuMP; DifferentialEquations.jl; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX); …

NumPy

Cited in 474 Documents (2000–2024)
Software Authors: Oliphant, T. E.
Related Software: Python; SciPy; Matplotlib; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

PDCO

Cited in 777 Documents (1999–2024)
Software Authors: Saunders, M.A
Related Software: CoSaMP; SPGL1; NESTA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

PARI/GP

Cited in 769 Documents (1992–2024)
Software Authors: Cohen, Henri; Belabas, Karim; PARI group
Related Software: Magma; SageMath; ecdata; …
Main Fields: Number theory (11-XX); Algebraic geometry (14-XX); Numerical analysis (65-XX); …

MACSYMA

Cited in 722 Documents (1971–2023)
Software Authors: symbolics
Related Software: Maple; Mathematica; REDUCE; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX); …

glasso

Cited in 690 Documents (2008–2024)
Software Authors: Mazumder, Rahul; Hastie, Trevor; J. Friedman, T.; R. Tibshirani
Related Software: R; glmnet; huge; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

FFTW

Cited in 599 Documents (2000–2024)
Software Authors: MIT; Frigo, Matteo; Johnson, Steven G.
Related Software: Matlab; LAPACK; ATLAS; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX); …

Matplotlib

Cited in 329 Documents (2007–2024)
Software Authors: Hunter, John; Dale, Darren; Firing, Eric; Droettboom, Michael; the matplotlib development team
Related Software: NumPy; Python; SciPy; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX); …

LINPACK

Cited in 509 Documents (1979–2023)
Software Authors: Department of Mathematics - University of Utah; J. Dongarra, J. Bunch, C. Moler, G. W. Stewart
Related Software: LAPACK; EISPACK; BLAS; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX); …

TETRAD

Cited in 503 Documents (1993–2024)
Software Authors: Glymour, Clark; Scheines, Richard; Spirtes, Peter; Ramsey, Joseph
Related Software: pcalg; R; bnlearn; …
Main Fields: Mathematical logic and foundations (03-XX); Combinatorics (05-XX); Statistics (62-XX); …

BRENT

Cited in 503 Documents (1971–2024)
Software Authors: Brent, Richard; Burkardt, John
Related Software: R; minpack; Matlab; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); …

NAG

Cited in 423 Documents (1976–2023)
Software Authors: Numerical Algorithms Group
Related Software: nag; Matlab; LAPACK; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX); …

MersenneTwister

Cited in 374 Documents (1998–2024)
Software Authors: Matsumoto, Makoto; Nishimura, Takuji
Related Software: TestU01; R; Diehard; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …

mclust

Cited in 332 Documents (1999–2024)
Software Authors: Fraley, Chris; Raftery, Adrian; Scrucca, Luca
Related Software: R; PGMM; flexmix; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

Qhull

Cited in 337 Documents (1996–2024)
Software Authors: Barber, C. Bradford; Huhdanpaa, Hannu
Related Software: Matlab; CGAL; Triangle; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

Octave

Cited in 306 Documents (1992–2024)
Software Authors: Eaton, John W.
Related Software: Matlab; R; Scilab; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX); …

Keras

Cited in 271 Documents (2017–2024)
Software Authors: Chollet, F.
Related Software: TensorFlow; Adam; GitHub; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

Eigen

Cited in 265 Documents (2012–2024)
Software Authors: Jacob, Benoît; Guennebaud, Gaël
Related Software: R; GitHub; PETSc; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX); …

fminsearch

Cited in 294 Documents (1996–2024)
Software Authors: Lagarias, Jeffrey C.; Reeds, James A.; Wright, Margaret H.; Wright, Paul E.
Related Software: Matlab; KELLEY; minpack; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX); …

GSL

Cited in 282 Documents (2002–2024)
Software Authors: Free Software Foundation; Galassi, M.; Davies, J.; Theiler, J.; Gough, B.; Jungman, G.; Alken, P.; Booth, M.; Rossi, F.
Related Software: R; LAPACK; PETSc; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX); …

t-SNE

Cited in 282 Documents (2008–2024)
Software Authors: Maaten, Laurens van der; Hinton, Geoffrey
Related Software: ImageNet; UMAP; Adam; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

PERL

Cited in 235 Documents (1992–2024)
Software Authors: Wall, Larry
Related Software: TTTPLOTS; Python; GRASP; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Computer science (68-XX); …

itsmr

Cited in 269 Documents (1996–2024)
Software Authors: Weigt, George
Related Software: ITSM2000; R; astsa; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …

LaTeX

Cited in 255 Documents (1988–2024)
Software Authors: Lamport, Leslie
Related Software: TeX; EXPFIT4; Maple; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Computer science (68-XX); …

igraph

Cited in 186 Documents (2010–2024)
Software Authors: Csárdi, Gábor; Nepusz, Tamás; Horvát, Szabolcs; Traag, Vincent; Zanini, Fabio
Related Software: R; Python; ggplot2; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX); …

k-means++

Cited in 251 Documents (2007–2024)
Software Authors: Arthur, D.; Vassilvitskii, S.
Related Software: UCI-ml; AS 136; Silhouettes; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

NetworkX

Cited in 213 Documents (2008–2024)
Software Authors: Aric Hagberg, Dan Schult, Pieter Swart
Related Software: Python; SciPy; NumPy; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX); …

randomForest

Cited in 211 Documents (2005–2024)
Software Authors: Breiman, Leo; Cutler, Adele; Liaw, Andy; Wiener, Matthew
Related Software: R; rpart; UCI-ml; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX); …

SymPy

Cited in 200 Documents (2010–2024)
Software Authors: SymPy Development Team; Joyner, David; Čertík, Ondřej; Meurer, Aaron; Granger, Brian E.
Related Software: Python; NumPy; SciPy; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX); …

ATLAS

Cited in 187 Documents (1992–2023)
Software Authors: Whaley, R. Clint
Related Software: LAPACK; BLAS; PHiPAC; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX); Computer science (68-XX); …

Algorithm 447

Cited in 192 Documents (1974–2024)
Software Authors: Hopcroft, J.; Tarjan, R.
Related Software: SCIP; R; Gurobi; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX); …

Maxima

Cited in 175 Documents (1998–2024)
Software Authors: Schelter, William
Related Software: Mathematica; SageMath; Maple; …
Main Fields: Group theory and generalizations (20-XX); Numerical analysis (65-XX); Computer science (68-XX); …

JavaScript

Cited in 144 Documents (1996–2024)
Software Authors: Flanagan
Related Software: Python; PHP; Node.js; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Computer science (68-XX); …

Scilab

Cited in 177 Documents (1999–2024)
Software Authors: Enterprises, Scilab; Fabbri, Ricardo
Related Software: Matlab; Octave; R; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

NLopt

Cited in 157 Documents (2012–2024)
Software Authors: Johnson, S.G.
Related Software: GitHub; R; BOBYQA; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX); …

rpart

Cited in 155 Documents (2000–2024)
Software Authors: Therneau, Terry; Atkinson, Beth; Ripley, Brian
Related Software: R; randomForest; UCI-ml; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

4ti2

Cited in 156 Documents (2004–2024)
Software Authors: Hemmecke, R; Köppe, M; Malkin, P; Walter, M
Related Software: Macaulay2; Normaliz; SINGULAR; …
Main Fields: Combinatorics (05-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX); …

TOMS659

Cited in 156 Documents (1988–2024)
Software Authors: Bratley, P.; Fox B, L.
Related Software: sobol.cc; Algorithm 647; MersenneTwister; …
Main Fields: Number theory (11-XX); Statistics (62-XX); Numerical analysis (65-XX); …

ISLR

Cited in 142 Documents (2013–2024)
Software Authors: James, Gareth; Witten, Daniela; Hastie, Trevor; Tibshirani, Rob
Related Software: ElemStatLearn; R; Scikit; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

MIM

Cited in 140 Documents (1995–2024)
Software Authors: Edwards, David
Related Software: glasso; TETRAD; R; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX); …

LattE

Cited in 137 Documents (2003–2024)
Software Authors: De Loera, J.A., Hemmecke, R., Tauzer, J., Yoshida, R; M. Köppe
Related Software: Normaliz; polymake; 4ti2; …
Main Fields: Combinatorics (05-XX); Number theory (11-XX); Convex and discrete geometry (52-XX); …

LOF

Cited in 95 Documents (2008–2024)
Software Authors: Breunig, M.; Kriegel, H.; Ng, R.; Sander, J.
Related Software: UCI-ml; Orca; IsolationForest; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX); …

Risa/Asir

Cited in 124 Documents (1992–2024)
Software Authors: Masayuki Noro, Kazuhiro Yokoyama, Taku Takeshima, Takeshi Shimoyama, Hiroshi Anai, Takayuki Kando, Tomokatsu Saito, Yuji Kondoh, Hirokazu Murao, Thomas Sturm, Katsuyoshi Ohara, Nobuki Takayama, (who committed to fundamental design, kernel sources and core libraries). As to committers of libraries and very recent contributors, see also http://www.math.kobe-u.ac.jp/OpenXM/people.html Fujitsu laboratory or asir.org or Kobe university.
Related Software: SINGULAR; Macaulay2; Kan; …
Main Fields: Commutative algebra (13-XX); Algebraic geometry (14-XX); Several complex variables and analytic spaces (32-XX); …

Jupyter

Cited in 55 Documents (2016–2023)
Software Authors: Project Jupyter; Perez, F.; Granger, B. E.
Related Software: Python; NumPy; SciPy; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

OpenMPI

Cited in 87 Documents (2004–2024)
Software Authors: http://www.open-mpi.org/about/members/
Related Software: CUDA; PETSc; MPI; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX); …

Scala

Cited in 93 Documents (2005–2024)
Software Authors: Loverdos, Christos K. K.; Syropoulos, Apostolos
Related Software: Coq; z3; Haskell; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Numerical analysis (65-XX); …

pandas

Cited in 24 Documents (2016–2024)
Software Authors: McKinney, Wes
Related Software: Python; NumPy; Matplotlib; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

pcalg

Cited in 90 Documents (2007–2023)
Software Authors: Kalisch, Markus; Maechler, Martin; Colombo, Diego
Related Software: TETRAD; R; bnlearn; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX); …

Graphviz

Cited in 74 Documents (2001–2023)
Software Authors: Ellson, John; Gansner, Emden; Koutsofios, Lefteris; North, Stephen C.; Woodhull, Gordon
Related Software: Dynagraph; R; Python; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX); …

bnlearn

Cited in 77 Documents (2009–2024)
Software Authors: Scutari, Marco
Related Software: R; TETRAD; pcalg; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX); …

VMD

Cited in 79 Documents (1999–2024)
Software Authors: Dalke, Andrew; Humphrey, William; Schulten, Klaus
Related Software: Gromacs; NAMD; CHARMM; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX); …

fastDNAml

Cited in 88 Documents (1987–2022)
Software Authors: Olsen, G. J., Matsuda, H., Hagstrom, R., Overbeek, R; Felsenstein
Related Software: PHYLIP; MrBayes; Seq-Gen; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX); …

HdBCS

Cited in 92 Documents (2004–2024)
Software Authors: Dobra, Adrian; Wang, Quanli; Zhang, Liang; West, Mike
Related Software: glasso; TETRAD; BDgraph; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX); …

Diehard

Cited in 82 Documents (1998–2024)
Software Authors: Marsaglia, George
Related Software: TestU01; NIST Statistical Test Suite; MersenneTwister; …
Main Fields: Number theory (11-XX); Statistics (62-XX); Numerical analysis (65-XX); …

ROBPCA

Cited in 86 Documents (2002–2023)
Software Authors: Hubert, M.; Rousseeuw, P. J.; Vanden Branden, K.
Related Software: robustbase; R; rrcov; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

SWI-Prolog

Cited in 75 Documents (2000–2024)
Software Authors: Wielemaker, J.; Schrijvers, T.; Triska, M.; Lager, T.
Related Software: SICStus; clpfd; YAP-Prolog; …
Main Fields: Mathematical logic and foundations (03-XX); Nonassociative rings and algebras (17-XX); Computer science (68-XX); …

lp_solve

Cited in 78 Documents (1996–2023)
Software Authors: Berkelaar, M.; Eikland, K.; Notebaert, P.
Related Software: lpSolve; R; CPLEX; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX); …

PARAFAC

Cited in 85 Documents (1976–2023)
Software Authors: Harshman, R.A.; Lundy, M.E.
Related Software: Tensorlab; Matlab; Multilinear Engine; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX); …

deSolve

Cited in 65 Documents (2009–2024)
Software Authors: Soetaert, Karline; Petzoldt, Thomas; Setzer, R. Woodrow
Related Software: R; diffEq; RootSolve; …
Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX); …

ergm

Cited in 63 Documents (2011–2024)
Software Authors: Handcock, Mark S.; Hunter, David R.; Butts, Carter T.; Goodreau, Steven M.; Krivitsky, Pavel N.; Morris, Martina
Related Software: R; statnet; network; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX); …

sobol.cc

Cited in 86 Documents (2003–2024)
Software Authors: Joe, Stephen; Kuo, Frances Y.
Related Software: TOMS659; MersenneTwister; QMC4PDE; …
Main Fields: Number theory (11-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX); …

PyMC

Cited in 63 Documents (2010–2024)
Software Authors: Fonnesbeck, Chris; Patil, Anand; Huard, David; Salvatier, John
Related Software: Stan; NUTS; Python; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

MUSCLE

Cited in 54 Documents (2005–2023)
Software Authors: Edgar, R. C.
Related Software: ClustalW; MAFFT; T-coffee; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX); …

STL

Cited in 72 Documents (1997–2021)
Software Authors: Musser, David R.; Stepanov, Alexander
Related Software: Boost; Boost C++ Libraries; CGAL; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Computer science (68-XX); …

gnuplot

Cited in 61 Documents (1995–2024)
Software Authors: Williams, T.; Kelley, C.
Related Software: LAPACK; Julia; Matplotlib; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX); …

ape

Cited in 62 Documents (2004–2024)
Software Authors: Paradis, Emmanuel; Bolker, Ben; Claude, Julien; Cuong, Hoa Sien; Desper, Richard; Durand, Benoit; Dutheil, Julien; Gascuel, Olivier; Heibl, Christoph; Lawson, Daniel; Lefort, Vincent; PierreLegendre; Lemon, Jim; Noel, Yvonnick; Nylander, Johan; RainerOpgen-Rhein; Popescu, Andrei-Alin; Schliep, Klaus; KorbinianStrimmer; Vienne, Damien de
Related Software: R; phytools; ggplot2; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX); …

SDaA

Cited in 70 Documents (1999–2023)
Software Authors: Verbeke, T.
Related Software: R; FRK; Survey; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

DEseq

Cited in 66 Documents (2011–2023)
Software Authors: Anders, Simon
Related Software: Bioconductor; edgeR; R; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Computer science (68-XX); …

MrBayes

Cited in 57 Documents (2004–2024)
Software Authors: Ronquist, F.; Huelsenbeck, J. P.; van der Mark, P.
Related Software: BEAST; RAxML; PHYLIP; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …

ROOT

Cited in 35 Documents (2001–2023)
Software Authors: Brun, René; Rademakers, Fons
Related Software: PYTHIA8; Python; GEANT4; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Quantum theory (81-XX); …

PAUP*

Cited in 52 Documents (1987–2024)
Software Authors: Swofford, David
Related Software: PHYLIP; RAxML; MrBayes; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX); …

OpenMx

Cited in 41 Documents (2006–2023)
Software Authors: Boker, Steven; Neale, Michael; Maes, Hermine; Wilde, Michael; Spiegel, Michael; Brick, Timothy; Spies, Jeffrey; Estabrook, Ryne; Kenny, Sarah; Bates, Timothy; Mehta, Paras; Fox, John
Related Software: R; Mplus; lavaan; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); …

lpSolve

Cited in 51 Documents (2001–2023)
Software Authors: Berkelaar, Michel; others
Related Software: lp_solve; R; Label.switching; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …

MAFFT

Cited in 32 Documents (2005–2023)
Software Authors: Katoh, K.; Misawa, K.; Kuma, K.; Miyata, T.
Related Software: MUSCLE; ClustalW; T-coffee; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX); …

Cd-hit

Cited in 36 Documents (2007–2024)
Software Authors: Li, Weizhong; Godzik, Adam
Related Software: Cell-PLoc; LIBSVM; PSI-BLAST; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Computer science (68-XX); …

BB

Cited in 38 Documents (2010–2024)
Software Authors: Varadhan, R.; Gilbert, P.
Related Software: R; optimx; nleqslv; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX); …

Orthogonal Array

Cited in 49 Documents (2010–2024)
Software Authors: Eendebak, P.T.; Schoen, E.D.
Related Software: nauty; Traces; DoE.base; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX); …

MinT

Cited in 47 Documents (2005–2023)
Software Authors: Schürer, Rudolf; Schmid, Wolfgang Ch.
Related Software: Code Tables; Magma; manYPoints; …
Main Fields: Combinatorics (05-XX); Number theory (11-XX); Algebraic geometry (14-XX); …

OpenBLAS

Cited in 35 Documents (2013–2024)
Software Authors: Xianyi, Zhang; Qian, Wang; Saar, Werner
Related Software: LAPACK; BLAS; MKL; …
Main Fields: Algebraic geometry (14-XX); Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); …

mlr

Cited in 25 Documents (2011–2023)
Software Authors: Bischl, B.; Wornowizki, M.; Borg, K.
Related Software: R; caret; Scikit; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Geophysics (86-XX); …

TOMP

Cited in 39 Documents (1994–2024)
Software Authors: Kraft, D.
Related Software: NLopt; DFVLR-SQP; R; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX); …

network

Cited in 11 Documents (2009–2022)
Software Authors: Butts, Carter T.; Hunter, David; Handcock, Mark; Bender-deMoll, Skye; Horner, Jeffrey
Related Software: R; statnet; ergm; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX); …

XGobi

Cited in 28 Documents (1995–2020)
Software Authors: Swayne, D. F.; Cook, D.; Buja, A.
Related Software: R; GGobi; ggplot2; …
Main Fields: Convex and discrete geometry (52-XX); Statistics (62-XX); Computer science (68-XX); …

KnotPlot

Cited in 37 Documents (1999–2023)
Software Authors: Scharein, Robert
Related Software: KnotInfo; Knot Atlas; stick-knot-gen; …
Main Fields: General and overarching topics; collections (00-XX); Calculus of variations and optimal control; optimization (49-XX); Differential geometry (53-XX); …

BioModels

Cited in 32 Documents (2008–2022)
Software Authors: Le Novere, N.; Bornstein, B.; Broicher, A.; Courtot, M.; Donizelli, M.; Dharuri, H.; Li, L.; Sauro, H.; Schilstra, M.; Shapiro, B.; Snoep, J.L.; Hucka, M
Related Software: COPASI; KEGG; z3; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Computer science (68-XX); …

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