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Found 408 Software Packages (Results 1–100)

Bioconductor

Software Authors:   open development project
Cited in: 211 Publications (2003–2022)
Related Software: R; gcrma; edgeR; limma; KEGG; DEseq; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

PASCAL VOC

Software Authors:   Everingham, M., Eslami, S. M. A., Van Gool, L., Williams, C. K. I., Winn, J., Zisserman, A
Cited in: 83 Publications (2010–2022)
Related Software: SIFT; ImageNet; MS-COCO; LabelMe; AlexNet; Caltech-256; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

UniProt

Software Authors:   The UniProt Consortium; Apweiler, R.; Bairoch, A.; Wu, C. H.; Barker, W. C.; Boeckmann, B.; Ferro, S.; Gasteiger, E.; Huang, H.; Lopez, R.; Magrane, M.; Martin, M. J.; Natale, D. A.; O’donovan, C.; Redaschi, N.; Yeh, L. S.
Cited in: 73 Publications (2004–2022)
Related Software: BLAST; PSI-BLAST; KEGG; Pfam; Cd-hit; LIBSVM; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Penn Treebank

Software Authors:   University of Pennsylvania
Cited in: 54 Publications (1996–2022)
Related Software: WordNet; BERT; Adam; Python; BLEU; TreeTagger; …
Main Fields: Mathematical logic and foundations (03-XX); Statistics (62-XX); Computer science (68-XX)

PLINK

Software Authors:   Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D et al
Cited in: 58 Publications (1994–2022)
Related Software: R; GCTA; Eigenstrat; STRUCTURE; Haploview; pi-MASS; …
Main Fields: Mathematical logic and foundations (03-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

DAVID

Software Authors:   Huang DW, Sherman BT, Tan Q et al
Cited in: 44 Publications (2007–2022)
Related Software: KEGG; Bioconductor; R; Cytoscape; limma; STRING; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

LabelMe

Software Authors:   Russell B.C., Torralba A., Murphy K.P., Freeman W.T.
Cited in: 19 Publications (2008–2022)
Related Software: PASCAL VOC; SIFT; ImageNet; GrabCut; MS-COCO; Caltech-256; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Information and communication theory, circuits (94-XX)

Gudhi

Software Authors:   INRIA; Clement Maria; Jean-Daniel Boissonnat; Marc Glisse; Mariette Yvinec
Cited in: 40 Publications (2014–2022)
Related Software: PHAT; Dionysus; javaPlex; Ripser; TDA; Perseus; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Numerical analysis (65-XX)

NUS-WIDE

Software Authors:   T.-S. Chua, J. Tang, R. Hong, H. Li, Z. Luo, Y. Zheng
Cited in: 21 Publications (2011–2021)
Related Software: CIFAR; SIFT; ImageNet; TagProp; WSABIE; LIBSVM; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Computer science (68-XX)

Hum-PLoc

Software Authors:   Chou KC, Shen HB
Cited in: 22 Publications (2007–2019)
Related Software: Cell-PLoc; Euk-mPLoc; Euk-PLoc; Hum-mPLoc; Memtype-2L; LIBSVM; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

miRBase

Software Authors:   Kozomara A, Griffiths-Jones S.
Cited in: 14 Publications (2009–2018)
Related Software: miRecords; KEGG; miTarget; starBase; MiPred; MiRFinder; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

Houdini

Software Authors:   Flanagan C, Leino KRM
Cited in: 19 Publications (2001–2020)
Related Software: ESC/Java; z3; JML; Eiffel; Boogie; Daikon; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX)

Cityscapes

Software Authors:   Marius Cordts, Mohamed Omran, Sebastian Ramos, Timo Rehfeld, Markus Enzweiler, Rodrigo Benenson, Uwe Franke, Stefan Roth, Bernt Schiele
Cited in: 15 Publications (2018–2022)
Related Software: MS-COCO; KITTI; DeepLab; ImageNet; U-Net; SYNTHIA Dataset; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

VAC

Software Authors:   –
Cited in: 21 Publications (1997–2022)
Related Software: LASY; ZEUS; IRMHD; ALEGRA; HLLE; Aztec; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

ESLpred

Software Authors:   Bhasin, M.; Raghava, G.
Cited in: 13 Publications (2005–2018)
Related Software: Cell-PLoc; LOCSVMPSI; PseAAC; LIBSVM; Cd-hit; Psortb; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Numerical analysis (65-XX)

TagProp

Software Authors:   Guillaumin, M., Mensink, T., Verbeek, J., & Schmid, C.
Cited in: 13 Publications (2010–2018)
Related Software: ImageNet; NUS-WIDE; SIFT; PASCAL VOC; Pegasos; C4.5; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

iDNA-Prot

Software Authors:   Liu, B., Xu, J., Lan, X., Xu, R., Zhou, J., Wang, X., Chou, K.-C.
Cited in: 16 Publications (2012–2019)
Related Software: AFP-Pred; iPPI-Esml; iPro54-PseKNC; Pse-in-One; pSuc-Lys; 2L-piRNA; …
Main Fields: Combinatorics (05-XX); Measure and integration (28-XX); Statistics (62-XX)

iSS-PseDNC

Software Authors:   Chen, W.; Feng, P. M.; Lin, H.
Cited in: 16 Publications (2014–2019)
Related Software: PseKNC; iRSpot-PseDNC; iCTX-Type; iRSpot-TNCPseAAC; iACP; pSuc-Lys; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Computer science (68-XX)

OmpSs

Software Authors:   Bueno J, Planas J, Duran A, Badia RM, Martorell X, Ayguade E, et al.
Cited in: 9 Publications (2015–2022)
Related Software: StarPU; Superglue; DAGuE; CUDA; Intel TBB; QUARK; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

SMART

Software Authors:   Letunic, I., Copley, R.R., Schmidt, S., Ciccarelli, F.D., Doerks, T., Schultz, J., Ponting, C.P., Bork, P.
Cited in: 7 Publications (2006–2019)
Related Software: Pfam; UniProt; PROSITE; ClustalW; PSI-BLAST; ELM; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

OrthoMCL

Software Authors:   Li, L., Stoeckert, C.J., Roos, D.
Cited in: 8 Publications (2006–2020)
Related Software: MSOAR; BLAST; PSI-BLAST; eggNOG; Proteinortho; PHYLIP; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

Kalign

Software Authors:   T. Lassmann, O. Frings, E. Sonnhammer
Cited in: 11 Publications (2011–2019)
Related Software: MUSCLE; ClustalW; T-coffee; MAFFT; ProbCons; Balibase; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

BioPortal

Software Authors:   Noy NF, Shah NH, Whetzel PL et al
Cited in: 8 Publications (2016–2020)
Related Software: DBpedia; Chainsaw; Konclude; FaCT++; Pellet; Galaxy; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Statistics (62-XX)

pGCL

Software Authors:   Cock, D.
Cited in: 13 Publications (2005–2022)
Related Software: Coq; Isabelle/HOL; Isabelle; HOL; Density Compiler; Lifting; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Probability theory and stochastic processes (60-XX)

DyC

Software Authors:   Grant, B., Mock, M., Philipose, M., Chambers, C., Eggers, S.J.
Cited in: 11 Publications (2000–2010)
Related Software: VCODE; ASM; TALx86; LMS; Flask; BCEL; …
Main Fields: Computer science (68-XX)

Galaxy

Software Authors:   Belinda Giardine, Cathy Riemer, Ross C. Hardison, Richard Burhans, Laura Elnitski, Prachi Shah, Yi Zhang, Daniel Blankenberg, Istvan Albert, James Taylor, Webb Miller, W. James Kent, Anton Nekrutenko
Cited in: 7 Publications (2009–2018)
Related Software: Bioconductor; R; TopHat; edgeR; STAR; BLAT; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Computer science (68-XX)

GO-TermFinder

Software Authors:   Boyle, E. I., Weng, S., Gollub, J., Jin, H., Botstein, D., Cherry, J. M., Sherlock, G.
Cited in: 5 Publications (2013–2020)
Related Software: FatiGO; STRING; Cytoscape; KEGG; GOstat; iGA; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

S-CREAM

Software Authors:   Handschuh, Siegfried; Staab, Steffen; Ciravegna, Fabio
Cited in: 8 Publications (2002–2008)
Related Software: MnM; Protege; ROADRUNNER; SVMlight; TXL; GATE; …
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

BEDTools

Software Authors:   Quinlan AR, Hall IM
Cited in: 7 Publications (2012–2019)
Related Software: R; Soap; IGV; FastQC; Samtools; edgeR; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

eggNOG

Software Authors:   Jaime Huerta-Cepas, Damian Szklarczyk, Kristoffer Forslund, Helen Cook, Davide Heller, Mathias C. Walter, Thomas Rattei, Daniel R. Mende, Shinichi Sunagawa, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork
Cited in: 6 Publications (2012–2021)
Related Software: OrthoMCL; Prokka; HMMER; MAFFT; R; OrthoDB; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

Gpos-PLoc

Software Authors:   Shen, H.B.; Chou, K.C.
Cited in: 11 Publications (2007–2017)
Related Software: Virus-ploc; Hum-PLoc; Hum-mPLoc; Euk-PLoc; Euk-mPLoc; Gneg-mPLoc; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MultiLoc

Software Authors:   Annette Höglund, Pierre Dönnes, Torsten Blum, Hans-Werner Adolph, Oliver Kohlbacher
Cited in: 7 Publications (2009–2018)
Related Software: MultiLoc2; Cell-PLoc; iLoc-Euk; Euk-PLoc; Euk-mPLoc; Plant-mPLoc; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Praat

Software Authors:   Paul Boersma; David Weenink
Cited in: 5 Publications (2003–2015)
Related Software: VOICEBOX; Matlab; Python; SciPy; LibROSA; pysptk; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Computer science (68-XX)

DynTex

Software Authors:   Renaud Péteria; Sándor Fazekasb; Mark J. Huiskesc
Cited in: 5 Publications (2013–2022)
Related Software: SIFT; LIBLINEAR; SURF; LIBSVM
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

iTOL

Software Authors:   Ivica Letunic; Peer Bork
Cited in: 5 Publications (2010–2022)
Related Software: BLAST; PSI-BLAST; MUSCLE; Cd-hit; BWA; CLMB; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

PREvaIL

Software Authors:   Song, Jiangning; Li, Fuyi; Takemoto, Kazuhiro; Haffari, Gholamreza; Akutsu, Tatsuya; Chou, Kuo-Chen; Webb, Geoffrey I.
Cited in: 10 Publications (2018–2019)
Related Software: iDNA6mA-PseKNC; iRNA-PseColl; pLoc-mAnimal; 2L-piRNA; iPromoter-2L; iRSpot-EL; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

recount

Software Authors:   Leonardo Collado-Torres, Abhinav Nellore, Andrew E. Jaffe, Margaret A. Taub, Kai Kammers, Shannon E. Ellis, Kasper Daniel Hansen, Ben Langmead, Jeffrey T. Leek
Cited in: 9 Publications (2014–2019)
Related Software: edgeR; Bioconductor; R; BaySeq; CAPUSHE; DESeq2; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

Wikipedia Miner

Software Authors:   David Milne; Ian H. Witten
Cited in: 4 Publications (2012–2019)
Related Software: DBpedia; MENTA; BabelNet; YAGO; Freebase; WordNet; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX)

WSABIE

Software Authors:   Weston, J., Bengio, S., Usunier, N.
Cited in: 8 Publications (2015–2022)
Related Software: word2vec; NUS-WIDE; ImageNet; Im2Text; GloVe; GitHub; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

PathBLAST

Software Authors:   Kelley, B. P., Yuan, B., Lewitter, F., Sharan, R., Stockwell, B. R., Ideker T
Cited in: 6 Publications (2011–2015)
Related Software: KEGG; BLAST; PSI-BLAST; ClustalW; MAVisto; FANMOD; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

Segmentor3IsBack

Software Authors:   Alice Cleynen, Michel Koskas, Emilie Lebarbier, Guillem Rigaill, Stephane Robin
Cited in: 5 Publications (2017–2021)
Related Software: changepoint; wbs; R; FDRSeg; stepR; not; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

AmiGO

Software Authors:   Carbon, S., Ireland, A., Mungall, C. J., Shu, S., Marshall, B., Lewis, S.
Cited in: 5 Publications (2010–2018)
Related Software: KEGG; OBO-Edit; DEOD; PRMLT; SMOTE; MARCH-INSIDE; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

RAST

Software Authors:   Meyer F, Paarmann D, D’Souza M et al
Cited in: 4 Publications (2012–2019)
Related Software: KEGG; MEGAN; Artemis; BLAST; PROSITE; PSI-BLAST; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

RepeatMasker

Software Authors:   Smit, A.F.A., Hubley, R., Green, P.
Cited in: 8 Publications (2007–2020)
Related Software: PipMaker; REPuter; ARACHNE; RePS; LAGAN; IDBA; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

ScanNet

Software Authors:   Angela Dai, Angel X. Chang, Manolis Savva, Maciej Halber, Thomas Funkhouser, Matthias Nießner
Cited in: 4 Publications (2019–2022)
Related Software: PointNet; ImageNet; SceneNN; DeepLab; Cityscapes; TensorFlow; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

SymChaff

Software Authors:   Sabharwal, Ashish
Cited in: 8 Publications (2007–2022)
Related Software: MiniSat; bliss; CDCLSym; Shatter; Chaff; Walksat; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX)

ToppGene Suite

Software Authors:   Chen, J., E. E. Bardes, B. J. Aronow, A. G. Jegga
Cited in: 6 Publications (2018–2021)
Related Software: glasso; DEseq; SILGGM; TestBMN; huge; GlobalMIT; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

VERL

Software Authors:   Francois A, Nevatia R, Hobbs J, Bolles R, Smith J
Cited in: 3 Publications (2011–2022)
Related Software: LIBSVM; MyStoryPlayer; OVID; Ratsnake; TopBraid; swrl; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX)

CAWICOMS

Software Authors:   Felfernig, Alexander; Friedrich, Gerhard; Jannach, Dietmar; Zanker, Markus
Cited in: 6 Publications (2001–2004)
Related Software: DAML+OIL; SiMoL; MINION; Simulink; Matlab; OOZE; …
Main Fields: Mathematical logic and foundations (03-XX); General algebraic systems (08-XX); Computer science (68-XX)

JACK

Software Authors:   Gilles Barthe, Lilian Burdy, Julien Charles, Benjamin Grégoire, Marieke Huisman, Jean-Louis Lanet, Mariela Pavlova, Antoine Requet
Cited in: 4 Publications (2004–2011)
Related Software: KRAKATOA; JML; ESC/Java; Caduceus; Why3; Coq; …
Main Fields: Computer science (68-XX)

simpA

Software Authors:   Ricci, Alessandro; Viroli, Mirko; Piancastelli, Giulio
Cited in: 4 Publications (2002–2012)
Related Software: CArtAgO; Featherweight Java; ReSpecT; Jadex; WADE; AmbientTalk; …
Main Fields: Computer science (68-XX)

Babelomics

Software Authors:   Al-Shahrour, F., Minguez, P., Vaquerizas, J. M., Conde, L., Dopazo, J.
Cited in: 3 Publications (2008–2010)
Related Software: FatiGO; GOstat; Bioconductor; R; KEGG; BicAT; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

Blast2GO

Software Authors:   Conesa, A., Götz, S., García-Gómez, J.M., Terol, J., Talón, M., Robles, M.
Cited in: 2 Publications (2019–2020)
Related Software: DAVID; Pfam; KEGG; MODELLER; InterProScan; I-TASSER; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

CAMERA

Software Authors:   Wu, D.; G. K. Smyth
Cited in: 6 Publications (2015–2021)
Related Software: R; ROAST; pyhrt; knockoff; cpi; GeneralisedCovarianceMeasure; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

EnsemblePail

Software Authors:   Yan Xu, Xiaobo Wang, Jun Ding, Ling-Yun Wu, Naiyang Deng
Cited in: 6 Publications (2010–2019)
Related Software: Cell-PLoc; iHyd-PseAAC; iUbiq-Lys; iATC-mHyb; iRNA-PseColl; pLoc-mVirus; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Flow Caml

Software Authors:   V. Simonet
Cited in: 5 Publications (2009–2018)
Related Software: Jif; HLIO; Haskell; JFlow; Creol; SeLINQ; …
Main Fields: Computer science (68-XX)

GOASVM

Software Authors:   Wan, S., Mak, M.W., Kung, S.Y.
Cited in: 6 Publications (2013–2018)
Related Software: Cell-PLoc; iRSpot-PseDNC; iLoc-Gpos; Euk-mPLoc; Plant-mPLoc; iLoc-Hum; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

JiffyTune

Software Authors:   Conn AR, Coulman PK, Haring RA, Morrill GL, Visweswariah C, Wu CW
Cited in: 5 Publications (1999–2014)
Related Software: LANCELOT; TILOS; Ipopt; Mosek; GGPLAB; LOQO; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Optics, electromagnetic theory (78-XX)

LASY

Software Authors:   Tóth, Gábor
Cited in: 6 Publications (1997–2021)
Related Software: VAC; Pluto; HLLE; NIRVANA; PARAMESH; SHASTA; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

PMut

Software Authors:   Ferrer-Costa C, Gelpí JL, Zamakola L, Parraga I, de la Cruz X, Orozco M
Cited in: 2 Publications (2010–2012)
Related Software: nsSNPAnalyzer; SNPs3D; UniProt; PANTHER; BLAST; PSI-BLAST; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

SyncSpecCnn

Software Authors:   Li Yi, Hao Su, Xingwen Guo, Leonidas Guibas
Cited in: 5 Publications (2018–2022)
Related Software: PointNet; SpectralNet; GSPBOX; CIFAR; AR face; CMU PIE; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

TiML

Software Authors:   Wang, P., Wang, D., Chlipala, A.
Cited in: 6 Publications (2018–2021)
Related Software: TcT; z3; Separation Logic; OptiMathSAT; Amortized Complexity; KITTeL; …
Main Fields: Computer science (68-XX)

VARNA

Software Authors:   K. Darty, A. Denise. Y. Ponty
Cited in: 4 Publications (2012–2022)
Related Software: ViennaRNA; Rfam; R2R; jViz.Rna; PseudoViewer3; Infernal; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Calculus of variations and optimal control; optimization (49-XX)

Artemis

Software Authors:   Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M.A., Barrell, B.
Cited in: 2 Publications (2014–2015)
Related Software: EasyGene; RAST; ARACHNE; RePS; JBROWSE; ABySS; …
Main Fields: Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

Evigan

Software Authors:   Liu Q1, Mackey AJ, Roos DS, Pereira FC
Cited in: 2 Publications (2011–2015)
Related Software: SURF; Theano; LIBLINEAR; LIBSVM; Matlab; ARACHNE; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

FrameNet

Software Authors:   Baumgartner, Peter; Burchardt, Aljoscha
Cited in: 5 Publications (2004–2010)
Related Software:
Main Fields: Computer science (68-XX)

GENETAG

Software Authors:   Tanabe, L.; Xie, N.; Thom, L.H.; Matten, W.; Wilbur, W.J.
Cited in: 1 Publication (2008)
Related Software: GENIA corpus; bootstrap; OpenDMAP; MedPost; ABNER; iHOP; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

GeneWise

Software Authors:   Ewan Birney; Michele Clamp; Richard Durbin
Cited in: 2 Publications (2005–2015)
Related Software: BLAST; PSI-BLAST; DIALIGN; bioperl; ACME; ClustalW; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

GOSim

Software Authors:   Holger Fröhlich
Cited in: 4 Publications (2011–2017)
Related Software: TRANSFAC; Tracer; MulRF; iGTP; TOPAL; ExaBayes; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

GOtcha

Software Authors:   Martin, D.M., Berriman, M., Barton, G.J.
Cited in: 3 Publications (2007–2008)
Related Software: GOPET; BayGO; Gaggle; GOLEM; BiNGO; ProbCD; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

kdetrees

Software Authors:   Grady Weyenberg, Ruriko Yoshida
Cited in: 5 Publications (2015–2019)
Related Software: BEAST; Mesquite; PhyloNet; ASTRAL-II; Phylo-MCOA; CLIFF; …
Main Fields: Combinatorics (05-XX); Convex and discrete geometry (52-XX); Statistics (62-XX)

methylKit

Software Authors:   Akalin, A., M. Kormaksson, S. Li, F. Garrett-Bakelman, M. Figueroa, A. Melnick, C. Mason
Cited in: 5 Publications (2016–2021)
Related Software: HMM-Fisher; HMM-DM; BSmooth; Bioconductor; MethylSig; MOABS; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

MnM

Software Authors:   Vargas-Vera, Maria; Motta, Enrico; Domingue, John; Lanzoni, Mattia; Stutt, Arthur; Ciravegna, Fabio
Cited in: 2 Publications (2002–2006)
Related Software: S-CREAM; DBpedia; Swoogle; AquaLog; swrl; SPARQL; …
Main Fields: Computer science (68-XX); Information and communication theory, circuits (94-XX)

OrthoDB

Software Authors:   Kriventseva EV et al
Cited in: 2 Publications (2013–2017)
Related Software: OrthoMCL; eggNOG; GASTS; MSOAR; Mauve; Tracer; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

PRED-CLASS

Software Authors:   Pasquier C, Promponas VJ, Hamodrakas SJ
Cited in: 3 Publications (2008–2012)
Related Software: SVMlight; SLEX; BLAST; PSI-BLAST; SWIFT; AAindex; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

ProbCD

Software Authors:   Ricardo Vêncio, Ilya Shmulevich
Cited in: 0 Publications
Related Software: GOPET; BayGO; Gaggle; GOLEM; GOtcha; BiNGO; …
Main Fields:

Prodigal

Software Authors:   Doug Hyatt, Gwo-Liang Chen, Philip F LoCascio, Miriam L Land, Frank W Larimer, Loren J Hauser
Cited in: 3 Publications (2016–2022)
Related Software: EasyGene; R; GeneMarkS; CRITICA; TICO; UniProt; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

ProGen

Software Authors:   Zhang, Xiao; Wang, Shan; Lian, Na
Cited in: 5 Publications (2008–2009)
Related Software: PSPLIB; Tabu search
Main Fields: Integral equations (45-XX); Numerical analysis (65-XX); Computer science (68-XX)

ProMiner

Software Authors:   Fraunhofer SCAI; D. Hanisch, K. Fundel, H.-T. Mevissen, R. Zimmer, J. Fluck
Cited in: 1 Publication (2017)
Related Software: MutationFinder; ABNER; iHOP; GDAL; FastDTW; ms2; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX)

QuickGO

Software Authors:   Binns, D.; Dimmer, E.; Huntley, R.; Barrell, D.; O'Donovan, C.; Apweiler, R.
Cited in: 4 Publications (2012–2015)
Related Software: Cell-PLoc; GOASVM; Euk-mPLoc; EpiLoc; YLoc; iNitro-Tyr; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

REDfly

Software Authors:   Halfon M, Gallo S, Bergman C
Cited in: 2 Publications (2019–2020)
Related Software: R; expansion-network; MaBoSS; GitHub; Python; Ginsim; …
Main Fields: Biology and other natural sciences (92-XX)

SLAM

Software Authors:   Alexandersson, M., Cawley, S., Pachter, L.
Cited in: 3 Publications (2005–2015)
Related Software: BLAST; ECgene; PSI-BLAST; BLAT; ARACHNE; RePS; …
Main Fields: Probability theory and stochastic processes (60-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

SUPERFAMILY

Software Authors:   Derek Wilson, Ralph Pethica, Yiduo Zhou, Charles Talbot, Christine Vogel, Martin Madera, Cyrus Chothia, Julian Gough
Cited in: 2 Publications (2010–2016)
Related Software: PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; dissectHMMER; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ANNOVAR

Software Authors:   Wang K, Li M, Hakonarson H
Cited in: 3 Publications (2014–2020)
Related Software: R; MEME; KEGG; WEKA; GenABEL; lme4; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

BioPhysConnectoR

Software Authors:   Hoffgaard, F.; Weil, P.; Hamacher, K.
Cited in: 2 Publications (2010)
Related Software: R; VMD; Pfam; Python; RHmm; BLAST; …
Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)

CCGbank

Software Authors:   Hockenmaier, Julia; Steedman, Mark
Cited in: 4 Publications (2007–2012)
Related Software: Penn Treebank; Gringo; clasp; IDPDraw; iClingo; Clingo; …
Main Fields: Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

ChromHMM

Software Authors:   Ernst, J., Kellis, M.
Cited in: 4 Publications (2017–2021)
Related Software: Bowtie 2; KEGG; edgeR; GitHub; STAR; intePareto; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

ComplexHeatmap

Software Authors:   Zuguang Gu
Cited in: 2 Publications (2018–2020)
Related Software: ggplot2; R; pheatmap; Superheat; heatmaply; dplyr; …
Main Fields: Statistics (62-XX)

DensePose

Software Authors:   Rıza Alp Güler, Natalia Neverova, Iasonas Kokkinos
Cited in: 2 Publications (2021–2022)
Related Software: ImageNet; PyTorch; Vid2Player; LoFTR; PointNet; Pixel2Mesh; …
Main Fields: Computer science (68-XX)

DISTIL

Software Authors:   Sudha Ram, Richard T. Snodgrass, Vijay Khatri and Yousub Hwang
Cited in: 3 Publications (2001–2006)
Related Software: OMT-G
Main Fields: Computer science (68-XX)

ExonHunter

Software Authors:   Brejová, B.; Brown, D. G.; Li, M.; Vinař, T.
Cited in: 3 Publications (2007–2008)
Related Software: ESTScan; GlimmerHMM; TigrScan; EasyGene; SMART; Pfam; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

GenomeGraphs

Software Authors:   Durinck S, Bullard J.
Cited in: 1 Publication (2016)
Related Software: Bioconductor; R; Rtracklayer; edgeR; Galaxy; ROAST; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

GOLEM

Software Authors:   R.S.G. Sealfon, M.A. Hibbs, C. Huttenhower, C.L. Myers, O.G. Troyanskaya
Cited in: 1 Publication (2013)
Related Software: BiNGO; GOPET; BayGO; Gaggle; GOtcha; ProbCD; …
Main Fields: Biology and other natural sciences (92-XX)

H3D

Software Authors:   Patil A., Malla S., Gang H., Chen Y.-T.
Cited in: 0 Publications
Related Software: ApolloScape; KITTI; Mapillary Vistas; MS-COCO; ImageNet; nuScenes; …
Main Fields:

INMEX

Software Authors:   Xia, J., C.D. Fjell, et al.
Cited in: 2 Publications (2018)
Related Software: R; shiny; limma; edgeR; ExAtlas; ScanGEO; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MARCH-INSIDE

Software Authors:   González-Díaz H, Prado-Prado F, Ubeira FM
Cited in: 4 Publications (2009–2014)
Related Software: GPCR-CA; PRMLT; SMOTE; AmiGO; MIND-BEST; PISCES; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

mGene

Software Authors:   Schweikert G, Zien A, Zeller G, Behr J, Dieterich C, Ong CS, Philips P, De Bona F, Hartmann L, Bohlen A
Cited in: 3 Publications (2013–2017)
Related Software: LIBSVM; Tracer; MulRF; iGTP; TOPAL; ExaBayes; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

MOTS

Software Authors:   Paul Voigtlaender, Michael Krause, Aljosa Osep, Jonathon Luiten, Berin Balachandar Gnana Sekar, Andreas Geiger, Bastian Leibe
Cited in: 4 Publications (2021–2022)
Related Software: ImageNet; KITTI; SSD; MOT16; EfficientNet; PyTorch; …
Main Fields: Computer science (68-XX)

Transcriber

Software Authors:   Barras, Claude; Geoffrois, Edouard; Wu, Zhibiao; Liberman, Mark
Cited in: 2 Publications (2001)
Related Software: C4.5; TRUEVIZ; Jazz; XGobi; S-PLUS; R
Main Fields: Computer science (68-XX)

AceView

Software Authors:   Thierry-Mieg D, Thierry-Mieg J
Cited in: 1 Publication (2017)
Related Software: BLAT; Tracer; MulRF; iGTP; TOPAL; ExaBayes; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)