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Found 254 Software Packages (Results 1–100)

ScaLAPACK

Software Authors:   Blackford, L.S.; Choi, J.; Cleary, A.; D'Azevedo, E.; Demmel, J.; Dhillon, I.; Dongarra, J.; Hammarling, S.; Henry, G.; Petitet, A.; Stanley, K.; Walker, D.; Whaley, R.C.
Referenced in: 402 Publications (1995–2022)
Related Software: LAPACK; BLAS; PLAPACK; MPI; PETSc; MUMPS; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX); Computer science (68-XX)

Neural Network Toolbox

Software Authors:   Demuth, H.B.,Beale, M., Hagan, M.T.
Referenced in: 131 Publications (1995–2021)
Related Software: Matlab; UCI-ml; Optimization Toolbox; C4.5; Wavelet Toolbox; Fuzzy Logic Toolbox; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

NetworkX

Software Authors:   Aric Hagberg, Dan Schult, Pieter Swart
Referenced in: 137 Publications (2008–2023)
Related Software: Python; SciPy; NumPy; Matplotlib; igraph; SNAP; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Graphs

Software Authors:   Sommer, Christian
Referenced in: 109 Publications (2013–2022)
Related Software: Algorithm 97; GraphChi; Pregel; OpenStreetMap; Volume; plfit; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

PDE-Net

Software Authors:   Zichao Long, Yiping Lu, Xianzhong Ma, Bin Dong
Referenced in: 91 Publications (2019–2022)
Related Software: DGM; Adam; TensorFlow; PyTorch; DeepONet; ImageNet; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

node2vec

Software Authors:   Aditya Grover, Jure Leskovec
Referenced in: 82 Publications (2017–2022)
Related Software: DeepWalk; word2vec; GraRep; t-SNE; Adam; struc2vec; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

DeepXDE

Software Authors:   Lu Lu, Xuhui Meng, Zhiping Mao, George E. Karniadakis
Referenced in: 71 Publications (2019–2022)
Related Software: Adam; DGM; PyTorch; FPINNs; TensorFlow; DiffSharp; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Gephi

Software Authors:   M. Bastian, S. Heymann, M. Jacomy
Referenced in: 57 Publications (2012–2022)
Related Software: NetworkX; ForceAtlas2; igraph; Cytoscape; Pajek; R; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

MCODE

Software Authors:   Bader, GD; Hogue, CWV
Referenced in: 41 Publications (2005–2022)
Related Software: CFinder; BioGRID; Cytoscape; GitHub; GenLouvain; DrugBank; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

ARACNE

Software Authors:   A. A. Margolin, I. Nemenman, K. Basso, C. Wiggins, G. Stolovitzky, R. D. Favera, A. Califano
Referenced in: 34 Publications (2009–2022)
Related Software: minet; KEGG; glasso; SynTReN; GeneNetWeaver; R; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

IntAct

Software Authors:   Hermjakob H, Montecchi-Palazzi L, Lewington C et al
Referenced in: 18 Publications (2006–2021)
Related Software: Cytoscape; BioGRID; KEGG; UniProt; STRING; TRANSFAC; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

NSFnets

Software Authors:   Xiaowei Jin, Shengze Cai, Hui Li, George Em Karniadakis
Referenced in: 30 Publications (2020–2022)
Related Software: Adam; DeepXDE; DiffSharp; TensorFlow; DGM; DeepONet; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Reluplex

Software Authors:   Guy Katz, Clark Barrett, David Dill, Kyle Julian, Mykel Kochenderfer
Referenced in: 27 Publications (2017–2021)
Related Software: AI2; Adam; Marabou; MNIST; DeepFool; NNV; …
Main Fields: Algebraic geometry (14-XX); Numerical analysis (65-XX); Computer science (68-XX)

REVEAL

Software Authors:   Liang, S., Fuhrman, S., Somogyi, R
Referenced in: 22 Publications (2003–2022)
Related Software: KEGG; R; BoolNet; E-CELL; GEPASI; Macaulay2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

XPINNs

Software Authors:   Zheyuan Hu, Ameya D. Jagtap, George Em Karniadakis, Kenji Kawaguchi
Referenced in: 26 Publications (2020–2022)
Related Software: Adam; TensorFlow; DiffSharp; PyTorch; FPINNs; PINNsNTK; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

CONTEST

Software Authors:   A. Taylor; D. J. Higham
Referenced in: 21 Publications (2010–2022)
Related Software: testmatrix; mftoolbox; SparseMatrix; Matlab; MatrixMarket; mctoolbox; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

MatConvNet

Software Authors:   Vedaldi, A. Lenc, K.
Referenced in: 20 Publications (2016–2021)
Related Software: ImageNet; AlexNet; Caffe; TensorFlow; DeCAF; Keras; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Statistics (62-XX); Numerical analysis (65-XX)

BigGAN

Software Authors:   Andrew Brock, Jeff Donahue, Karen Simonyan
Referenced in: 18 Publications (2019–2022)
Related Software: Wasserstein GAN; pix2pix; CycleGAN; StyleGAN; Adam; InfoGAN; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

FANMOD

Software Authors:   Wernicke, S.; Rasche, F.
Referenced in: 17 Publications (2010–2021)
Related Software: Kavosh; MAVisto; MODA; KEGG; NeMoFinder; MetaCyc; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

SciANN

Software Authors:   Haghighat, Ehsan; Juanes, Ruben
Referenced in: 17 Publications (2021–2022)
Related Software: TensorFlow; DeepXDE; Adam; DiffSharp; SimNet; SciPy; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Edward

Software Authors:   Tran, D., Kucukelbir, A., Dieng, A. B., Rudolph, M., Liang, D., Blei, D. M.
Referenced in: 12 Publications (2017–2022)
Related Software: Stan; TensorFlow; ADVI; Theano; PyMC; Adam; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Numerical analysis (65-XX)

MEBN

Software Authors:   Laskey, Kathryn Blackmond
Referenced in: 11 Publications (2008–2018)
Related Software: BLOG; PR-OWL; IBAL; PRISM; BayesOWL; BUGS; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Statistics (62-XX)

SEMINT

Software Authors:   Li, W.-S.; Clifton, C.
Referenced in: 9 Publications (2000–2009)
Related Software: WordNet; Etuner; AdaBoost.MH; JGraphT; Anchor-PROMPT; PROMPT; …
Main Fields: General algebraic systems (08-XX); Computer science (68-XX)

HyFIS

Software Authors:   Kim J, Kasabov N
Referenced in: 9 Publications (2002–2021)
Related Software: ANFIS; DENFIS; R; CORElearn; fRegression; nnet; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

NetworKit

Software Authors:   Christian L. Staudt, Aleksejs Sazonovs, Henning Meyerhenke
Referenced in: 14 Publications (2015–2020)
Related Software: SNAP; KONECT; Hyperbolic graph generator; NetworkX; LAMG; igraph; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Computer science (68-XX)

PORGY

Software Authors:   Maribel Fernandez; Hélène Kirchner
Referenced in: 14 Publications (2011–2020)
Related Software: GP 2; ELAN; GROOVE; Stratego; visone; Haskell; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

AgenaRisk

Software Authors:   Fenton, Norman; Neil, Martin
Referenced in: 11 Publications (2013–2021)
Related Software: R; TETRAD; Elicitator; dobson; arm; brms; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

FACTORIE

Software Authors:   Andrew McCallum, Karl Schultz, Sameer Singh
Referenced in: 11 Publications (2011–2020)
Related Software: Church; IBAL; ProbLog; BLOG; Haskell; Infer.NET; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Information and communication theory, circuits (94-XX)

SPOOK

Software Authors:   A. Pfeffer, D. Koller, B. Milch, K. Takusagawa
Referenced in: 11 Publications (2000–2020)
Related Software: BLOG; FACTORIE; IBAL; TETRAD; PRISM; MEBN; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

BrainNet Viewer

Software Authors:   Xia M, Wang J, He Y.
Referenced in: 10 Publications (2018–2021)
Related Software: Brain Connectivity Toolbox; CONN; GraphVar; eConnectome; Gephi; Matlab; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Ordinary differential equations (34-XX); Statistics (62-XX)

Data2Dynamics

Software Authors:   Raue A, Steiert B, Schelker M, Kreutz C, Maiwald T, Hass H, et al
Referenced in: 8 Publications (2018–2021)
Related Software: AMIGO; PESTO; PEtab; COPASI; SUNDIALS; R; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX)

DOULION

Software Authors:   C. E. Tsourakakis, U. Kang, G. L. Miller, C. Faloutsos
Referenced in: 12 Publications (2011–2020)
Related Software: MapReduce; 5tbl; six-subgraph; CUDA; WebGraph; STRING; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Kavosh

Software Authors:   Kashani ZR, Ahrabian H, Elahi E, Nowzari-Dalini A, Ansari ES, Asadi S, Mohammadi S, Schreiber F, Masoudi-Nejad A
Referenced in: 9 Publications (2012–2021)
Related Software: FANMOD; MODA; NeMoFinder; gSpan; MetaCyc; MAVisto; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

LaplaceAndzTransform

Software Authors:   Graf, Urs
Referenced in: 11 Publications (2004–2020)
Related Software: Matlab; Maple; Algorithm 682; CUDA; OEIS; Mathematica
Main Fields: Partial differential equations (35-XX); Difference and functional equations (39-XX); Integral transforms, operational calculus (44-XX)

Muxviz

Software Authors:   M. De Domenico, M. A. Porter, A. Arenas
Referenced in: 9 Publications (2017–2022)
Related Software: GenLouvain; sna; igraph; R; multiplex; RSiena; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

Spikenet

Software Authors:   Arnaud Delorme; Simon J Thorpe
Referenced in: 8 Publications (2005–2014)
Related Software: NEURON; XPPAUT; UniProt; WebGestalt; KDDONTO; Protege; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Computer science (68-XX)

DeepSurv

Software Authors:   Katzman, JL; Shaham, U.; Cloninger, A.; Bates, J.; Jiang, T.; Kluger, Y
Referenced in: 10 Publications (2019–2022)
Related Software: Adam; pycox; survival; GitHub; PyTorch; SVRc; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

jHoles

Software Authors:   Binchi, Jacopo; Merelli, Emanuela; Rucco, Matteo; Petri, Giovanni; Vaccarino, Francesco
Referenced in: 10 Publications (2014–2022)
Related Software: javaPlex; PHAT; Perseus; Gudhi; Ripser; Dionysus; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Numerical analysis (65-XX)

JIDT

Software Authors:   Joseph T. Lizier, Ipek Özdemir, Pedro Mediano
Referenced in: 6 Publications (2018–2020)
Related Software: TRENTOOL; MuTE; IDTxl; Python; NetComp; NetLSD; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Statistical mechanics, structure of matter (82-XX)

JiTCODE

Software Authors:   Ansmann, Gerrit
Referenced in: 8 Publications (2018–2022)
Related Software: JiTCSDE; JiTCDDE; Python; SciPy; PowerDynamics.jl; StochasticDelayDiffEq.jl; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

TempoGAN

Software Authors:   You Xie, Erik Franz, Mengyu Chu, Nils Thuerey
Referenced in: 10 Publications (2019–2022)
Related Software: Adam; AlexNet; ImageNet; pix2pix; CycleGAN; Glow; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

bnsoft

Software Authors:   Kevin Murphy
Referenced in: 8 Publications (2009–2022)
Related Software: Blaise; R; Infer.NET; SemiPar; KernSmooth; PRMLT; …
Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Numerical analysis (65-XX)

FoldX

Software Authors:   Schymkowitz J., Borg J., Stricher F., Nys R., Rousseau F., Serrano L.
Referenced in: 7 Publications (2007–2016)
Related Software: PoPMuSiC; CHARMM; ProTherm; SIB-BLAST; PUDGE; PAComplex; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

hubauth

Software Authors:   Baglama, J.; Fenu, C.; Reichel, L.; Rodriguez, G.
Referenced in: 9 Publications (2014–2020)
Related Software: blgaussexp; sgcen; mftoolbox; OPQ; ABLE; Pajek datasets; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Approximations and expansions (41-XX)

JiTCSDE

Software Authors:   Ansmann, Gerrit
Referenced in: 9 Publications (2018–2022)
Related Software: JiTCODE; JiTCDDE; Ode15s; Conedy; PyDSTool; Matlab; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

Marabou

Software Authors:   Katz, G., Huang, D.A., Ibeling, D., Julian, K., Lazarus, C., Lim, R., Shah, P., Thakoor, S.,Wu, H., Zelji ́c, A., Dill, D.L., Kochenderfer, M.J., Barrett, C.
Referenced in: 7 Publications (2021)
Related Software: Reluplex; MNIST; AI2; VERIFAI; PRODeep; XNOR-Net; …
Main Fields: Algebraic geometry (14-XX); Convex and discrete geometry (52-XX); Computer science (68-XX)

TIGRESS

Software Authors:   Haury, A.C., Mordelet, F., Vera-Licona, P., Vert, J.P.
Referenced in: 9 Publications (2013–2019)
Related Software: SIRENE; ARACNE; glasso; JASPAR; BioGRID; glmnet; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

ADAM

Software Authors:   Hinkelmann F, Brandon M, Guang B, McNeill R, Blekherman G, Veliz-Cuba A, Laubenbacher R
Referenced in: 8 Publications (2011–2020)
Related Software: Ginsim; Macaulay2; BoolNet; SNOOPY; Polynome; multistatepdscontrol; …
Main Fields: Algebraic geometry (14-XX); Linear and multilinear algebra; matrix theory (15-XX); Biology and other natural sciences (92-XX)

booleannet

Software Authors:   Albert, I.; Thakar, J.; Li, S.; Zhang, R.; Albert, R.
Referenced in: 7 Publications (2010–2020)
Related Software: PANET; CANA; Python; Cellnoptr; Graphviz; XPPAUT; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

ESSC

Software Authors:   Wilson, James D.; Wang, Simi; Mucha, Peter J.; Bhamidi, Shankar; Nobel, Andrew B.
Referenced in: 8 Publications (2014–2020)
Related Software: GenLouvain; CoSaMP; qstest; AS 307; fda.usc; Rainbow; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

JiTCDDE

Software Authors:   Ansmann, Gerrit
Referenced in: 8 Publications (2018–2022)
Related Software: JiTCSDE; JiTCODE; Ode15s; Conedy; PyDSTool; Matlab; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

MCINTYRE

Software Authors:   Riguzzi, F.
Referenced in: 7 Publications (2015–2019)
Related Software: ProbLog; PITA; CP-logic; PRISM; cplint; SWI-Prolog; …
Main Fields: Computer science (68-XX)

NodeXL

Software Authors:   Shneiderman, Ben; Dunne, Cody
Referenced in: 6 Publications (2013–2022)
Related Software: Gephi; Pajek; WORDij; Ipopt; IsoMatch; recmap; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

OptNet

Software Authors:   Brandon Amos, J. Zico Kolter
Referenced in: 7 Publications (2018–2022)
Related Software: Adam; PyTorch; CVXGEN; Julia; DiffSharp; torchdiffeq; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)

pyunicorn

Software Authors:   Jonathan F. Donges, Jobst Heitzig, Boyan Beronov, Marc Wiedermann, Jakob Runge, Qing Yi Feng, Liubov Tupikina, Veronika Stolbova, Reik V. Donner, Norbert Marwan, Henk A. Dijkstra, J. Kurths
Referenced in: 6 Publications (2015–2021)
Related Software: SciPy; TISEAN; igraph; Python; NetworkX; NumPy; …
Main Fields: Combinatorics (05-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

QuACN

Software Authors:   Laurin Müller, Michael Schutte, Karl Kugler, Matthias Dehmer
Referenced in: 8 Publications (2012–2019)
Related Software: R; nauty; Mathematica; igraph; CPOLY; graph; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

SGN Sim

Software Authors:   Ribeiro AS, Lloyd-Price J
Referenced in: 7 Publications (2009–2019)
Related Software: RegulonDB; GeneNetWeaver; Path2Models; SOSlib; LASSIE; BioPreDyn-bench; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

TopologyNet

Software Authors:   Zixuan Cang, Guo-Wei Wei
Referenced in: 8 Publications (2020–2022)
Related Software: Ripser; TDA; PersistenceImages; javaPlex; Dionysus; PHAT; …
Main Fields: Combinatorics (05-XX); Differential geometry (53-XX); Algebraic topology (55-XX)

Utopia

Software Authors:   P. Zulian, A. Kopaničáková, M.C.G. Nestola, A. Fink, N. Fadel, V. Magri, T. Schneider, E. Botter
Referenced in: 8 Publications (2018–2022)
Related Software: PETSc; ParMoonolith; libMesh; MOOSE; MeshIt; PorePy; …
Main Fields: Operator theory (47-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

Hyperbolic graph generator

Software Authors:   Aldecoa, Rodrigo; Orsini, Chiara; Krioukov, Dmitri
Referenced in: 7 Publications (2015–2021)
Related Software: NetworKit; network; KONECT; sna; igraph; R; …
Main Fields: Combinatorics (05-XX); General topology (54-XX); Statistics (62-XX)

MBDyn

Software Authors:   M. Fancello, P. Masarati, M. Morandini, V. Muscarello, G. Quaranta
Referenced in: 6 Publications (2007–2022)
Related Software: OpenSeesPy; preCICE; Vega; GitHub; CMake; Doxygen; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of particles and systems (70-XX)

parest_dae

Software Authors:   Casian Pantea, Ankur Gupta, James B. Rawlings, Gheorghe Craciun
Referenced in: 7 Publications (2014–2020)
Related Software: SINGULAR; neural ideal; GitHub; Ginsim; Macaulay2; DAISY; …
Main Fields: Field theory and polynomials (12-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX)

AdaGAN

Software Authors:   Ilya Tolstikhin, Sylvain Gelly, Olivier Bousquet, Carl-Johann Simon-Gabriel, Bernhard Schölkopf
Referenced in: 6 Publications (2019–2022)
Related Software: Wasserstein GAN; pix2pix; CycleGAN; VEEGAN; TensorFlow; CopulaModel; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Computer science (68-XX)

CANN

Software Authors:   Linka, Kevin; Hillgärtner, Markus; Abdolazizi, Kian P.; Aydin, Roland C.; Itskov, Mikhail; Cyron, Christian J.
Referenced in: 6 Publications (2021–2022)
Related Software: TensorFlow; DiffSharp; Python; laGP; SciPy; DACE; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Clockwork RNN

Software Authors:   Jan Koutník, Klaus Greff, Faustino Gomez, Jürgen Schmidhuber
Referenced in: 2 Publications (2019–2022)
Related Software: Evolino; Zoneout; Adam; ImageNet; RMSprop; LSTM; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

EoN

Software Authors:   Joel C. Miller, Tony TIng
Referenced in: 2 Publications (2017–2019)
Related Software: Python; EpiModel; R; SciPy; Graph-tool; epydemic; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

KPConv

Software Authors:   Hugues Thomas, Charles R. Qi, Jean-Emmanuel Deschaud, Beatriz Marcotegui, Francois Goulette, Leonidas J. Guibas
Referenced in: 5 Publications (2020–2022)
Related Software: PointNet; PointCNN; TensorFlow; t-SNE; Faster R-CNN; MinkowskiEngine; …
Main Fields: Mathematical logic and foundations (03-XX); Numerical analysis (65-XX); Computer science (68-XX)

NARROMI

Software Authors:   Zhang, X.; Liu, K.; Liu, Z. P.; Duval, B.; Richer, J. M.; Zhao, X. M.; Hao, J. K.; Chen, L.
Referenced in: 6 Publications (2014–2019)
Related Software: BENEDICT; TETRAD; pcalg; impute; GeneNetWeaver; Path2Models; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

PIPE

Software Authors:   Pitre, S.; Dehne, F.; Chan, A.; Cheetham, J.; Duong, A.; Emili, A.; Gebbia, M.; Greenblatt, J.; Jessulat, M.; Krogan, N.; Luo, X.; Golshani, A.
Referenced in: 1 Publication (2011)
Related Software: InterPreTS; LIBSVM; Cd-hit; Negatome; DIMA; Hum-PLoc; …
Main Fields: Biology and other natural sciences (92-XX)

TPtool

Software Authors:   Szabolcs Nagy; Zoltán Petres; Peter Baranyi
Referenced in: 6 Publications (2014–2017)
Related Software: YALMIP; Qhull; SDPT3; Robust Control Toolbox; Matlab
Main Fields: Ordinary differential equations (34-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

VeriFlow

Software Authors:   A. Khurshid, X. Zou, W. Zhou, M. Caesar, P. B. Godfrey
Referenced in: 6 Publications (2016–2021)
Related Software: NetKAT; Anteater; VeriCon; CESAR; Frenetic; Kuai; …
Main Fields: Mathematical logic and foundations (03-XX); Combinatorics (05-XX); Computer science (68-XX)

Antimony

Software Authors:   Lucian P. Smith, Frank T. Bergmann, Deepak Chandran, Herbert M. Sauro
Referenced in: 1 Publication (2010)
Related Software: Python; PEtab; Data2Dynamics; COPASI; SimpleSBML; libSBML; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

CayleyNets

Software Authors:   Ron Levie, Federico Monti, Xavier Bresson, Michael M. Bronstein
Referenced in: 4 Publications (2019–2022)
Related Software: PyTorch; Adam; TensorFlow; MovieLens; DGL; DeepGCNs; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Computer science (68-XX)

CRNreals

Software Authors:   G. Szederkényi, J.R. Banga, A.A. Alonso
Referenced in: 5 Publications (2014–2022)
Related Software: GLPK; YALMIP; CLP; SCIP; Matlab
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Classical thermodynamics, heat transfer (80-XX)

GemPy

Software Authors:   Miguel de la Varga, Alexander Schaaf, Florian Wellmann
Referenced in: 3 Publications (2019–2021)
Related Software: pandas; Rasterio; SciPy; Matplotlib; NumPy; Python; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Geophysics (86-XX)

KADABRA

Software Authors:   Borassi, Michele; Natale, Emanuele
Referenced in: 5 Publications (2016–2021)
Related Software: SNAP
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)

MODA

Software Authors:   Omidi S, Schreiber F, Masoudi-Nejad A
Referenced in: 3 Publications (2014–2020)
Related Software: Kavosh; NeMoFinder; FANMOD; Graemlin; gSpan; STAMP; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

neural-tangents

Software Authors:   Roman Novak, Lechao Xiao, Jiri Hron, Jaehoon Lee, Alexander A. Alemi, Jascha Sohl-Dickstein, Samuel S. Schoenholz
Referenced in: 4 Publications (2020–2021)
Related Software: JAX; TensorFlow; Python; Adam; ImageNet; PyTorch; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

SketchREAD

Software Authors:   Alvarado C, Davis R
Referenced in: 4 Publications (2007–2014)
Related Software: CALI; Tahuti; HCRF; PerfectDoc; PixLabeler; TRUEVIZ; …
Main Fields: Computer science (68-XX)

Spectronet

Software Authors:   Huber, K.; Langton, M.; Penny, D.; Moulton, V.; Hendy, M
Referenced in: 5 Publications (2005–2017)
Related Software: Hetero; SplitsTree; MrBayes; Tracer; MulRF; iGTP; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Probability theory and stochastic processes (60-XX)

VBayesLab

Software Authors:   Tran, M.-N.; Nguyen, N.; Nott, D.; Kohn, R.
Referenced in: 5 Publications (2019–2021)
Related Software: abcrf; BayesDA; ADADELTA; RStan; rstan; GPfit; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

BioPath

Software Authors:   Brandenburg, Franz J.; Forster, Michael; Pick, Andreas; Raitner, Marcus; Schreiber, Falk
Referenced in: 3 Publications (2002–2004)
Related Software: BioMiner; KEGG; IPSep-CoLa; TRANSPATH; InterViewer; ViSta; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

Conedy

Software Authors:   Rothkegel, Alexander; Lehnertz, Klaus
Referenced in: 4 Publications (2012–2021)
Related Software: JiTCSDE; JiTCODE; JiTCDDE; PyDSTool; NetworkX; NeuralPDE.jl; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX)

DeepPPI

Software Authors:   X. Du, S. Sun, C. Hu, et al.
Referenced in: 4 Publications (2019)
Related Software: AlexNet; PPI_SVM; GitHub; Adam; ImageNet; darch; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

FraC

Software Authors:   Fourno, André; Ngo, Tri-Dat; Noetinger, Benoit; La Borderie, Christian
Referenced in: 4 Publications (2019–2021)
Related Software: FoamGrid; DuMuX; PFLOTRAN; dfnWorks; PorePy; ISTL; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

GEMFsim

Software Authors:   Faryad Darabi Sahneh, Aram Vajdi, Heman Shakeri, Futing Fan, Caterina Scoglio
Referenced in: 3 Publications (2018–2021)
Related Software: SNAP; EpiModel; FRED; Epigrass; gleamviz; NDlib; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistical mechanics, structure of matter (82-XX); Operations research, mathematical programming (90-XX)

Kornia

Software Authors:   Edgar Riba, Dmytro Mishkin, Daniel Ponsa, Ethan Rublee, Gary Bradski
Referenced in: 0 Publications
Related Software: PyTorch; TensorFlow; ImageNet; TorchIO; MNIST; Scikit; …
Main Fields:

MARCH-INSIDE

Software Authors:   González-Díaz H, Prado-Prado F, Ubeira FM
Referenced in: 4 Publications (2009–2014)
Related Software: GPCR-CA; PRMLT; SMOTE; AmiGO; MIND-BEST; PISCES; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

MMG

Software Authors:   Sanguinetti G, Noirel J, Wright PC
Referenced in: 1 Publication (2019)
Related Software: GeneNetWeaver; Path2Models; SOSlib; LASSIE; BioPreDyn-bench; sgnesR; …
Main Fields: Biology and other natural sciences (92-XX)

MultiPlane

Software Authors:   Hong, Seok-Hee
Referenced in: 4 Publications (2006–2010)
Related Software: GAUDI
Main Fields: Dynamical systems and ergodic theory (37-XX); Differential geometry (53-XX); Computer science (68-XX)

Nettle

Software Authors:   A. Voellmy, A. Agarwal, P. Hudak
Referenced in: 3 Publications (2017–2021)
Related Software: Frenetic; NetKAT; SDN-SafeCheck; AProVE; Maude; SGS; …
Main Fields: Computer science (68-XX)

NS-3

Software Authors:   Meloni, Sandro; Gómez-Gardeñes, Jesús; Latora, Vito; Moreno, Yamir
Referenced in: 4 Publications (2012–2021)
Related Software: Robotics; YALMIP
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

OPEN DESIRE

Software Authors:   Granino A. Korn; Terry M. Korn
Referenced in: 4 Publications (1991–2022)
Related Software: ViT; Deformable DETR; MinkowskiEngine; Tensor2Tensor; PyTorch
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

PyTorch-Kaldi

Software Authors:   Mirco Ravanelli, Titouan Parcollet, Yoshua Bengio
Referenced in: 1 Publication (2021)
Related Software: PyTorch; TensorFlow; LibriSpeech; Kaldi; Python; Jasper; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

SLIM

Software Authors:   Deleersnijder, Eric; et.al.
Referenced in: 4 Publications (2008–2017)
Related Software: Gmsh; FVCOM; ROMS; AUSM; GSL
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

YANA

Software Authors:   Roland Schwarz, Patrick Musch, Axel von Kamp, Bernd Engels, Heiner Schirmer, Stefan Schuster, Thomas Dandekar
Referenced in: 4 Publications (2007–2012)
Related Software: Metatool; FluxAnalyzer; efmtool; FFCA
Main Fields: Combinatorics (05-XX); Biology and other natural sciences (92-XX)

AmbientGAN

Software Authors:   Ashish Bora, Eric Price, Alexandros G. Dimakis
Referenced in: 3 Publications (2020–2021)
Related Software: MisGAN; pix2pix; CycleGAN; GAIN; RoCGAN; sngan_projection; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Computer science (68-XX)

ARACNe-AP

Software Authors:   Lachmann A, Giorgi FM, Lopez G, Califano A.
Referenced in: 2 Publications (2018–2019)
Related Software: pycit; infotheory; IDTxl; MDEntropy; SciPy; NumPy; …
Main Fields: Biology and other natural sciences (92-XX)

BioModelAnalyzer

Software Authors:   Ahmed, Zara; Benque, David; Berezin, Sergey; Dahl, Anna Caroline E.; Fisher, Jasmin; Hall, Benjamin A.; Ishtiaq, Samin; Nanavati, Jay; Piterman, Nir; Riechert, Maik; Skoblov, Nikita
Referenced in: 2 Publications (2017–2021)
Related Software: Cytoscape.js; ATLANTIS; Aeon; PyBoolNet; ASSA-PBN; Ginsim; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

COBRApy

Software Authors:   Ali Ebrahim, Joshua A Lerman, Bernhard O Palsson, Daniel R Hyduke
Referenced in: 2 Publications (2015–2019)
Related Software: METRADE; DFBAlab; MoNeRe; COBRA Toolbox; fastGapFill; meneco; …
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)