ExpEdit swMATH ID: 17165 Software Authors: Picardi E, D’Antonio M, Carrabino D, Castrignanò T, Pesole G. Description: ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments. Summary: ExpEdit is a web application for assessing RNA editing in human at known or user-specified sites supported by transcript data obtained by RNA-Seq experiments. Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions. Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context. Availability: ExpEdit is freely available on the web at http://www.caspur.it/ExpEdit/. Homepage: http://bioinformatics.oxfordjournals.org/content/27/9/1311.short Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; OptiRNAi; ASTALAVISTA; PredGPI; SPEPlip; BaCelLo; PolyA_DB; ASPicDB; BioMart; AstexViewer; SCOOP; WAR; PatSearch; NGS QC Toolkit; DARNED Cited in: 1 Publication Cited by 1 Author 1 Picardi, Ernesto Cited in 1 Serial 1 Methods in Molecular Biology Cited in 2 Fields 1 General and overarching topics; collections (00-XX) 1 Biology and other natural sciences (92-XX) Citations by Year