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Found 20 Software Packages (Results 1–20)

APBS

Software Authors:   Nathan Baker; J. Andrew McCammon; Michael Holst
Referenced in: 91 Publications (2001–2022)
Related Software: MIBPB; tabipb; CHARMM; TABI; PDB2PQR; PBEQ-Solver; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

MIBPB

Software Authors:   Duan Chen; Zhan Chen; Changjun Chen; Weihua Geng; Guo-Wei Wei
Referenced in: 57 Publications (2010–2022)
Related Software: APBS; tabipb; TABI; PDB2PQR; CHARMM; PBEQ-Solver; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

tabipb

Software Authors:   W.H. Geng; R. Krasny
Referenced in: 0 Publications
Related Software: TABI; MIBPB; APBS; TMSmesh; PDB2PQR; CHARMM; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

TABI

Software Authors:   Geng, Weihua; Krasny, Robert
Referenced in: 32 Publications (2013–2021)
Related Software: tabipb; APBS; MIBPB; PDB2PQR; TMSmesh; CHARMM; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

TMSmesh

Software Authors:   Chen M., Lu B.
Referenced in: 21 Publications (2013–2020)
Related Software: APBS; MIBPB; tabipb; TABI; TetGen; AFMPB; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

PBEQ-Solver

Software Authors:   S. Jo, M. Vargyas, J. Vasko-Szedlar, B. Roux, W. Im
Referenced in: 14 Publications (2011–2022)
Related Software: APBS; MIBPB; CHARMM; PDB2PQR; tabipb; TABI; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

AFMPB

Software Authors:   Lu, B.; Cheng, X.; Huang, J.; Mccammon, J. A.
Referenced in: 12 Publications (2010–2021)
Related Software: APBS; MIBPB; TMSmesh; tabipb; TABI; PAFMPB; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

SDPBS

Software Authors:   Jiang, Yi; Xie, Yang; Ying, Jinyong; Xie, Dexuan; Yu, Zeyun
Referenced in: 7 Publications (2015–2019)
Related Software: MIBPB; DelPhi Web Server; AFMPB; FEniCS; PDB2PQR; APBS; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

PAFMPB

Software Authors:   Zhang, Bo; Peng, Bo; Huang, Jingfang; Pitsianis, Nikos P.; Sun, Xiaobai; Lu, Benzhuo
Referenced in: 6 Publications (2015–2019)
Related Software: tabipb; TMSmesh; AFMPB; APBS; VCMM; DASHMM; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

PyGBe

Software Authors:   Cooper, Christopher D.; Barba, Lorena A.
Referenced in: 4 Publications (2014–2019)
Related Software: tabipb; Python; TABI; MIBPB; PyCUDA; APBS; …
Main Fields: Computer science (68-XX); Optics, electromagnetic theory (78-XX); Quantum theory (81-XX)

SMPBS

Software Authors:   Xie, Y.; Ying, J.; Xie, D.
Referenced in: 5 Publications (2018–2021)
Related Software: MIBPB; APBS; AFMPB; DOLFIN; SDPBS; PDB2PQR; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

Apbsmem

Software Authors:   Callenberg, K.M.; Choudhary, O.P.; de Forest, G.L.; Gohara, D.W.; Baker, N.A.; Grabe, M.
Referenced in: 4 Publications (2013–2018)
Related Software: MIBPB; APBS; tabipb; TABI; TMSmesh; CHARMM; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Optics, electromagnetic theory (78-XX)

AQUASOL

Software Authors:   P. Koehl, M. Delarue
Referenced in: 3 Publications (2015–2017)
Related Software: SDPBS; Python; AFMPB; MIBPB; PDB2PQR; DOLFIN; …
Main Fields: Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX); Quantum theory (81-XX)

LS-VISM

Software Authors:   Zhou, S., Cheng, L., Sun, H., Che, J., Dzubiella, J., Li, B., McCammon, J.A.
Referenced in: 3 Publications (2016–2018)
Related Software: PETSc; hypre; BoomerAMG; XTROEM-FV; WIGEON; UTBEST3D; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

PDB_Hydro

Software Authors:   Azuara C, Lindahl E, Koehl P, Orland H, Delarue M
Referenced in: 2 Publications (2010–2011)
Related Software: MIBPB; ISIM
Main Fields: Partial differential equations (35-XX); Differential geometry (53-XX); Biology and other natural sciences (92-XX)

DAFMPB

Software Authors:   Zhang, Bo; Debuhr, Jackson; Niedzielski, Drake; Mayolo, Silvio; Lu, Benzhuo; Sterling, Thomas
Referenced in: 1 Publication (2019)
Related Software: tabipb; VCMM; DASHMM; TABI; PyGBe; PBEQ-Solver; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

DelEnsembleElec

Software Authors:   Votapka, Lane W.; Czapla, Luke; Zhenirovskyy, Maxim; Amaro, Rommie E.
Referenced in: 1 Publication (2013)
Related Software: VMD; DelPhi Web Server; PDB2PQR; CHARMM; AMBER
Main Fields: Biology and other natural sciences (92-XX)

ManifoldCode

Software Authors:   Pellikka, M.; Tarhasaari, T.; Suuriniemi, S.; Kettunen, L.
Referenced in: 1 Publication (2013)
Related Software: PyDEC; Gmsh
Main Fields: Differential geometry (53-XX); Numerical analysis (65-XX)

MPBEC

Software Authors:   S. Vergara-Perez; M. Marucho
Referenced in: 1 Publication (2021)
Related Software: APBS
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)

PB-AM

Software Authors:   Lisa E. Feldberg, David H. Brookes, Eng-Hui Yap, Elizabeth Jurrus, Nathan Baker, Teresa Head-Gordon
Referenced in: 1 Publication (2021)
Related Software:
Main Fields: Numerical analysis (65-XX); Biology and other natural sciences (92-XX)