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Found 522 Software Packages (Results 1–100)

R

Software Authors:   Hadley Wickham; Robert Gentleman; Ross Ihaka; John M. Chambers; William N. Venables; Brian D. Ripley
Referenced in: 8,357 Publications (1978–2023)
Related Software: CRAN; SAS; MASS (R); ggplot2; S-PLUS; Matlab; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

fda (R)

Software Authors:   J. O. Ramsay, Hadley Wickham, Spencer Graves, Giles Hooker
Referenced in: 1,558 Publications (1997–2022)
Related Software: R; SemiPar; ElemStatLearn; fda.usc; refund; KernSmooth; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

CRAN

Software Authors:   cran.r-project.org/
Referenced in: 372 Publications (2002–2022)
Related Software: R; ggplot2; Rcpp; MASS (R); survival; glmnet; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Bioconductor

Software Authors:   open development project
Referenced in: 212 Publications (2003–2022)
Related Software: R; gcrma; edgeR; limma; KEGG; DEseq; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Mfree2D

Software Authors:   G.R. Liu, Z.H. Tu
Referenced in: 324 Publications (2002–2022)
Related Software: Matlab; XFEM; ABAQUS; FEAPpv; LS-DYNA; MFDMtool; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

INTOPT_90

Software Authors:   Kearfott, R.Baker
Referenced in: 304 Publications (1996–2021)
Related Software: INTLAB; PROFIL/BIAS; C-XSC; C-XSC 2.0; BARON; Numerica; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX)

knitr

Software Authors:   Yihui Xie et. al.
Referenced in: 39 Publications (2012–2022)
Related Software: R; ggplot2; shiny; rmarkdown; Rcpp; Sweave; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

ergm

Software Authors:   Mark S. Handcock, David R. Hunter, Carter T. Butts, Steven M. Goodreau, Pavel N. Krivitsky, Martina Morris
Referenced in: 48 Publications (2011–2022)
Related Software: R; statnet; network; Bergm; sna; igraph; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

sedaR

Software Authors:   Stéphane Dray; Roger Bivand; Pierre Legendre; Jari Oksanen; F. Guillaume Blanchet; Peter Solymos; Jean Thioulouse; Gavin Simpson; Thibaut Jombart
Referenced in: 62 Publications (1998–2021)
Related Software: R; Canoco; bootstrap; ade4; ElemStatLearn; vegan; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

NCAlgebra

Software Authors:   JW Helton, R Miller, M Stankus
Referenced in: 54 Publications (1994–2021)
Related Software: NCSOStools; SeDuMi; Mathematica; YALMIP; GloptiPoly; SparsePOP; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Associative rings and algebras (16-XX); Operator theory (47-XX)

tidyverse

Software Authors:   Hadley Wickham
Referenced in: 21 Publications (2017–2022)
Related Software: R; ggplot2; dplyr; knitr; RStudio; shiny; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

devtools

Software Authors:   Wickham, Hadley; Winston Chang
Referenced in: 11 Publications (2014–2021)
Related Software: R; ggplot2; testthat; Rcpp; knitr; CODA; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

QuTiP

Software Authors:   J. R. Johansson, P. D. Nation, F. Nori
Referenced in: 24 Publications (2015–2022)
Related Software: Python; NumPy; SciPy; WavePacket; QuantumOptics.jl; Krotov; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

RMetrics

Software Authors:   Rmetrics Association
Referenced in: 35 Publications (2008–2022)
Related Software: R; fGarch; fBasics; tseries; copula; copula; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

fpp2

Software Authors:   Rob Hyndman, RStudio
Referenced in: 29 Publications (2019–2022)
Related Software: forecast; R; Forecast; astsa; lme4; expsmooth; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Rcmdr

Software Authors:   John Fox; Milan Bouchet-Valat
Referenced in: 14 Publications (2007–2019)
Related Software: R; RKWard; tcltk2; CRAN; JGR; FactoMineR; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

CliqueTop

Software Authors:   Giusti C
Referenced in: 30 Publications (2015–2022)
Related Software: Holes; Ripser; GitHub; javaPlex; PersistenceImages; Gudhi; …
Main Fields: Combinatorics (05-XX); Algebraic topology (55-XX); Statistics (62-XX)

PDDE-CONT

Software Authors:   Roose, Dirk; Szalai, Robert
Referenced in: 31 Publications (1997–2022)
Related Software: DDE-BIFTOOL; Knut; dde23; pchip; UNCMND; ARPACK; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)

FracSym

Software Authors:   Jefferson, G.F.; Carminati, J.
Referenced in: 30 Publications (2014–2021)
Related Software: DESOLVII; Maple; ASP; Matlab; SYMMGRP; Python; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

Elemental

Software Authors:   Jack Poulson; Bryan Marker; Robert A. van de Geijn; Jeff R. Hammond; Nichols A. Romero
Referenced in: 24 Publications (2012–2022)
Related Software: ScaLAPACK; LAPACK; BLAS; PLAPACK; lobpcg.m; PETSc; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Statistics (62-XX)

maptools

Software Authors:   Roger Bivand
Referenced in: 8 Publications (2007–2020)
Related Software: R; rgdal; RColorBrewer; ggplot2; Surveillance; CODA; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

ITSM2000

Software Authors:   Brockwell, Peter J.; Davis, Richard A.
Referenced in: 20 Publications (2016–2022)
Related Software: itsmr; astsa; GitHub; Python; Matlab; sapa; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)

MOLPRO

Software Authors:   H.-J. Werner, P. J. Knowles; AJ Stone, R Tarroni, T Thorsteinsson
Referenced in: 19 Publications (2001–2022)
Related Software: GAUSSIAN; SciPy; Maple; SelInv; ABINIT; CRYSCOR; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Quantum theory (81-XX)

ramcmc

Software Authors:   Jouni Helske
Referenced in: 23 Publications (2012–2022)
Related Software: R; BayesDA; BGX; Bioconductor; NUTS; BartPy; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

coxeter

Software Authors:   Stembridge, J.R
Referenced in: 22 Publications (1994–2019)
Related Software: posets; SF; Maple; LiE; Letterplace; ncHilb; …
Main Fields: Combinatorics (05-XX); Order, lattices, ordered algebraic structures (06-XX); Nonassociative rings and algebras (17-XX)

FlowLab

Software Authors:   LaRoche, R.D.; Hutchings, B.J.; Muralikrishnan, R.
Referenced in: 22 Publications (2008–2021)
Related Software: OpenFOAM; ParaView; GIMP; Gmsh; FLUENT; AVL; …
Main Fields: General and overarching topics; collections (00-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

hgm R

Software Authors:   Nakayama, Hiromasa; Nishiyama, Kenta; Noro, Masayuki; Ohara, Katsuyoshi; Sei, Tomonari; Takayama, Nobuki; Takemura, Akimichi
Referenced in: 21 Publications (2011–2022)
Related Software: Risa/Asir; HolonomicFunctions; R; DLMF; Kan; Macaulay2; …
Main Fields: Associative rings and algebras (16-XX); Several complex variables and analytic spaces (32-XX); Special functions (33-XX)

Samtools

Software Authors:   Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R
Referenced in: 16 Publications (2012–2019)
Related Software: BWA; Soap; GATK; R; VarScan; BLAT; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

foreign

Software Authors:   R Core Team; Roger Bivand; Vincent J. Carey; Saikat DebRoy; Stephen Eglen; Rajarshi Guha; Nicholas Lewin-Koh; Mark Myatt; Ben Pfaff; Frank Warmerdam; Stephen Weigand; Free SoftwareFoundation, Inc
Referenced in: 18 Publications (2007–2019)
Related Software: R; ggplot2; lattice; RODBC; Hmisc; MASS (R); …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

msgl

Software Authors:   Martin Vincent, Niels Richard Hansen
Referenced in: 20 Publications (2013–2022)
Related Software: glmnet; R; glasso; UCI-ml; SLEP; AS 136; …
Main Fields: Convex and discrete geometry (52-XX); Statistics (62-XX); Computer science (68-XX)

xgboost

Software Authors:   Tianqi Chen, Tong He, Michael Benesty
Referenced in: 13 Publications (2017–2022)
Related Software: R; XGBoost; ranger; randomForest; glmnet; Scikit; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

CLICAL

Software Authors:   Lounesto, P., Mikkola, R., Vierros, V.
Referenced in: 17 Publications (1992–2017)
Related Software: CLIFFORD; Maple; BIGEBRA; GABLE; Gaigen; LUCY; …
Main Fields: Number theory (11-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

fpp

Software Authors:   Rob J Hyndman
Referenced in: 17 Publications (2016–2021)
Related Software: forecast; Forecast; R; astsa; expsmooth; fpp2; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

moveHMM

Software Authors:   Theo Michelot, Roland Langrock, Toby Patterson, Eric Rexstad
Referenced in: 14 Publications (2016–2022)
Related Software: R; momentuHMM; circular; ctmm; crawl; CircStats; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

OPDOE

Software Authors:   Petr Simecek, Jürgen Pilz, Mingui Wang, Albrecht Gebhardt
Referenced in: 16 Publications (1990–2020)
Related Software: R; R-programs; NIST Statistical Test Suite; TestU01; omniORB; PORT; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Real functions (26-XX); Operator theory (47-XX)

BvpSolve

Software Authors:   Karline Soetaert, Jeff Cash, Francesca Mazzia
Referenced in: 14 Publications (2011–2022)
Related Software: R; RootSolve; deSolve; acdc; twpbvpl; twpbvp; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

gRbase

Software Authors:   Søren Højsgaard; Claus Dethlefsen; Clive Bowsher
Referenced in: 6 Publications (2015–2022)
Related Software: R; gRain; bnlearn; deal; pcalg; ggm; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

maps

Software Authors:   Richard A. Becker, Allan R. Wilks, Ray Brownrigg, Thomas P Minka, Alex Deckmyn
Referenced in: 8 Publications (2015–2022)
Related Software: R; ggplot2; maptools; rgdal; shiny; fields; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

OxMetrics

Software Authors:   Clint Cummins; Jurgen A Doornik; David F Hendry; Siem Jan Koopman; Sébastien Laurent; Marius Ooms; Neil R. Ericsson; Andrew C Harvey; Neil Shephard; Charles Bos
Referenced in: 13 Publications (2007–2020)
Related Software: Ox; R; longmemo; SAS; QUADPACK; gnuplot; …
Main Fields: History and biography (01-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

SoDA

Software Authors:   Chambers, John M.
Referenced in: 14 Publications (2004–2018)
Related Software: R; lattice; ggplot2; RGraphics; rrcov; colorspace; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

DALEX

Software Authors:   Przemyslaw Biecek
Referenced in: 5 Publications (2019–2022)
Related Software: R; pdp; iml; lime; ggplot2; InterpretML; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

EpiModel

Software Authors:   Samuel Jenness, Steven M. Goodreau, Martina Morris, Emily Beylerian, Skye Bender-deMoll, Kevis Weiss
Referenced in: 5 Publications (2020–2022)
Related Software: R; Python; SciPy; EoN; Surveillance; epinet; …
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

FASTCLIME

Software Authors:   Pang, Haotian; Liu, Han; Vanderbei, Robert
Referenced in: 13 Publications (2014–2022)
Related Software: glasso; QUIC; R; penalizedLDA; msda; flare; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

NSM3

Software Authors:   Grant Schneider, Eric Chicken, Rachel Becvarik
Referenced in: 14 Publications (2012–2020)
Related Software: Traceis; PRMLT; Eigenstrat; STRUCTURE; GenAlEx; PLINK; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

batchtools

Software Authors:   Michel Lang, Bernd Bischl, Dirk Surmann
Referenced in: 9 Publications (2017–2021)
Related Software: R; OpenML; mlr; clustermq; parallelMap; tidyverse; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

BioHMM

Software Authors:   J. C. Marioni; N. P. Thorne; S. Tavaré
Referenced in: 10 Publications (2009–2014)
Related Software: PennCNV; R; CGHclassify; AS 136; ExomeCNV; CNV-seq; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Ebimage

Software Authors:   Pau, Grégoire; Fuchs, Florian; Sklyar, Oleg; Boutros, Michael; Huber, Wolfgang
Referenced in: 6 Publications (2015–2021)
Related Software: R; AnalyzeFMRI; oro.nifti; oro.dicom; imager; RNiftyReg; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

EVSL

Software Authors:   R. Li, Y. Xi, L. Erlandson, Y. Saad
Referenced in: 11 Publications (2019–2022)
Related Software: ARPACK; SparseMatrix; CIRR; LAPACK; FEAST; PRIMME; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

SOCR

Software Authors:   Ivo D. Dinov
Referenced in: 3 Publications (2014–2019)
Related Software: MotionCharts; R; StatCrunch; WebStat; Statlab; JSci; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

future

Software Authors:   Henrik Bengtsson
Referenced in: 2 Publications (2021)
Related Software: R; ggplot2; doFuture; foreach; rjags; Scikit; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

maSigPro

Software Authors:   Conesa, A.; Nueda, M. J.; Talon, M.
Referenced in: 6 Publications (2009–2021)
Related Software: Bioconductor; EDGE; edgeR; R; DESeq2; ptmixed; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

meta

Software Authors:   Guido Schwarzer
Referenced in: 3 Publications (2011–2019)
Related Software: R; metafor; rmeta; MetaEasy; Stata; RevMan; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

truncdist

Software Authors:   Frederick Novomestky, Saralees Nadarajah
Referenced in: 7 Publications (2011–2019)
Related Software: R; CODA; maptools; spTimer; spatcounts; nlme; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

Algorithm 916

Software Authors:   Zaghloul, Mofreh R.; Ali, Ahmed N.
Referenced in: 8 Publications (2011–2021)
Related Software: Matlab; Faddeeva; Algorithm 680; DLMF; Algorithm 985; SPECFUN; …
Main Fields: Functions of a complex variable (30-XX); Special functions (33-XX); Approximations and expansions (41-XX)

DoE.base

Software Authors:   Ulrike Groemping, Boyko Amarov, Hongquan Xu
Referenced in: 5 Publications (2017–2021)
Related Software: R; DoE.wrapper; FrF2; PLANOR; AlgDesign; conf.design; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)

fastcluster

Software Authors:   Müllner, D.
Referenced in: 6 Publications (2015–2022)
Related Software: R; UCI-ml; Python; mclust; Matlab; LIBSVM; …
Main Fields: Algebraic topology (55-XX); Statistics (62-XX); Computer science (68-XX)

INTERVAL_ARITHMETIC

Software Authors:   Kearfott, R.Baker
Referenced in: 9 Publications (1996–2017)
Related Software: INTLIB; INTOPT_90; GSL; EISPACK; Matlab; LAPACK; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Statistics (62-XX)

mlr3

Software Authors:   Michel Lang, Bernd Bischl, Jakob Richter, Patrick Schratz, Giuseppe Casalicchio, Stefan Coors, Quay Au, Martin Binder
Referenced in: 3 Publications (2021–2022)
Related Software: R; mlr; caret; tidymodels; Scikit; DALEX; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

RobASt

Software Authors:   Kohl, Matthias
Referenced in: 10 Publications (2005–2022)
Related Software: R; RobLox; ROptEst; CRAN; robustbase; distrEx; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX)

unmarked

Software Authors:   Ian Fiske, Richard Chandler, David Miller, Andy Royle, Marc Kery, Jeff Hostetler, Rebecca Hutchinson
Referenced in: 6 Publications (2015–2020)
Related Software: R; PRESENCE; WinBUGS; VGAM; MARK; ggplot2; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

bayesplot

Software Authors:   Jonah Gabry, Paul-Christian Buerkner
Referenced in: 0 Publications
Related Software: R; Stan; brms; JAGS; rstan; ggplot2; …
Main Fields:

COBRA

Software Authors:   Biau, Gérard; Fischer, Aurélie; Guedj, Benjamin; Malley, James D. D.
Referenced in: 9 Publications (2016–2021)
Related Software: SuperLearner; hgam; XGBoost; ElemStatLearn; AdaBoost.MH; gbm; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

MDAnalysis

Software Authors:   Gowers, R. J.; Linke, M.; Barnoud, J.; Reddy, T. J.E.; Melo, M. N.; Seyler, S. L.
Referenced in: 1 Publication (2018)
Related Software: Python; NumPy; Gromacs; OpenMM; HOOMD-blue; SciPy; …
Main Fields: Fluid mechanics (76-XX)

muJava

Software Authors:   Ma, Y.-S.; Offutt, A.J.; Kwon, Y.-R
Referenced in: 0 Publications
Related Software: BPEL4WS; TVG; AETG; Guava; ConTest; Eraser; …
Main Fields:

performance

Software Authors:   Daniel Lüdecke, Dominique Makowski, Philip Waggoner
Referenced in: 0 Publications
Related Software: R; bayestestR; insight; effectsize; parameters; see; …
Main Fields:

Valmet

Software Authors:   Gerig, Guido; Jomier, Matthieu; Chakos, Miranda
Referenced in: 7 Publications (2001–2020)
Related Software: batchgenerators; FreeSurfer; HDF5; SciPy; Scikit; scikit-image; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

Zelig

Software Authors:   Christine Choirat, James Honaker, Kosuke Imai, Gary King, Olivia Lau
Referenced in: 3 Publications (2014–2017)
Related Software: R; ggplot2; survival; knitr; RStudio; Stata; …
Main Fields: Statistics (62-XX); Computer science (68-XX)

BACCO

Software Authors:   Hankin RKS
Referenced in: 2 Publications (2009–2016)
Related Software: R; DiceKriging; DiceDesign; emulator; calibrator; Mathematica; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Geophysics (86-XX)

BayesPeak

Software Authors:   Cairns, Jonathan M.; Spyrou, Christiana; Stark, Rory; Smith, Mike L.; Lynch, Andy G.; Tavaré, Simon
Referenced in: 4 Publications (2012–2019)
Related Software: HPeak; FindPeaks; DEGseq; edgeR; R; deepTools2; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)

biglasso

Software Authors:   Yaohui Zeng, Patrick Breheny
Referenced in: 5 Publications (2017–2022)
Related Software: glmnet; R; rticles; ggplot2; knitr; testthat; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

DLVHEX

Software Authors:   Van Nieuwenborgh, Davy; De Cock, Martine; Vermeir, Dirk; Eiter, T., Ianni, G., Schindlauer, R., Tompits, H.
Referenced in: 7 Publications (2010–2019)
Related Software: Clingo; Hexlite; ActHEX; Python; WASP; DLV2; …
Main Fields: Computer science (68-XX)

fdANOVA

Software Authors:   Górecki, Tomasz; Smaga, Łukasz
Referenced in: 8 Publications (2019–2022)
Related Software: R; fda (R); mfds; GitHub; fda.usc; rrcov; …
Main Fields: General and overarching topics; collections (00-XX); Functional analysis (46-XX); Probability theory and stochastic processes (60-XX)

JASP

Software Authors:   Jonathon Love; Ravi Selker; Maarten Marsman; Tahira Jamil; Damian Dropmann; Josine Verhagen; Alexander Ly; Quentin Gronau; Martin Šmíra; Sacha Epskamp; Dora Matzke; Anneliese Wild; Patrick Knight; Jeffrey Rouder; Richard Morey; Eric-Jan Wagenmakers
Referenced in: 3 Publications (2019–2022)
Related Software: R; BayesFactor; SPSS; BAS; car; bridgesampling; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX)

Kwant

Software Authors:   Christoph W Groth, Michael Wimmer, Anton R Akhmerov, Xavier Waintal
Referenced in: 2 Publications (2019–2021)
Related Software: Python; SMEAGOL; NumPy; SciPy; LAPACK; TBTK; …
Main Fields: Partial differential equations (35-XX); Statistical mechanics, structure of matter (82-XX)

PET

Software Authors:   Joern Schulz; Peter Toft
Referenced in: 8 Publications (1998–2020)
Related Software: FreeFem++; CUDA; MIRT; ASTRA; NFFT3; NFFT; …
Main Fields: Integral transforms, operational calculus (44-XX); Numerical analysis (65-XX); Computer science (68-XX)

Phyloseq

Software Authors:   Paul J. McMurdie; Susan Holmes
Referenced in: 5 Publications (2015–2021)
Related Software: R; ggplot2; GUniFrac; shiny; vegan; multtest; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

SC3

Software Authors:   Vladimir Yu Kiselev, Kristina Kirschner, Michael T. Schaub, Tallulah Andrews, Andrew Yiu, Tamir Chandra, Kedar N. Natarajan, Wolf Reik, Mauricio Barahona, Anthony R Green, Martin Hemberg
Referenced in: 8 Publications (2017–2021)
Related Software: CIDR; ZIFA; SNN-Cliq; DESeq2; MAST; DEseq; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

shinystan

Software Authors:   Jonah Gabry, Stan Development Team, Michael Andreae, Michael Betancourt, Bob Carpenter, Yuanjun Gao, Andrew Gelman, Ben Goodrich, Daniel Lee, Dongying Song, Rob Trangucci
Referenced in: 0 Publications
Related Software: R; Stan; RStan; ggplot2; rstanarm; JAGS; …
Main Fields:

XMIPP

Software Authors:   Sorzano, C. O. S.; Marabini, R.; Velazquez-Muriel, J.; Bilbao-Castro, J. R.; Scheres, S. H. W.; Carazo, J. M.; Pascual-Montano, A.
Referenced in: 7 Publications (2006–2020)
Related Software: FREALIGN; EMan; cryoSPARC; RELION; IMAGIC; ODL; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

BITE

Software Authors:   Tommi Härkänen
Referenced in: 7 Publications (2003–2014)
Related Software: Intcox; CRAN; bayesSurv; survBayes; R; Bassist; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

gputools

Software Authors:   Josh Buckner, Mark Seligman, Justin Wilson
Referenced in: 4 Publications (2010–2019)
Related Software: CUDA; R; LLVM; CUBLAS; ATLAS; rpud; …
Main Fields: Global analysis, analysis on manifolds (58-XX); Statistics (62-XX); Numerical analysis (65-XX)

marrayClasses

Software Authors:   Sandrine Dudoit, Jean Yee Hwa Yang
Referenced in: 7 Publications (2003–2013)
Related Software: marrayPlots; marrayNorm; marrayInput; R; Bioconductor; EBarrays; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

MENDEL

Software Authors:   Lange, K.; Cantor, R.; Horvath, S.; Perola, M.; Sabatti, C.; Sinsheimer, J.; Sobel, E.
Referenced in: 6 Publications (2012–2019)
Related Software: spcov; lme4; BOADICEA; Pedcheck; ViennaRNA; QAPgrid; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

multivariance

Software Authors:   Björn Böttcher, Martin Keller-Ressel
Referenced in: 7 Publications (2018–2021)
Related Software: R; energy; IndependenceTests; TwoCop; dcortools; pgraph; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Orca

Software Authors:   Sutherland P, Rossini A, Lumley T, Lewin-Koh N, Dickerson J, Cox Z, Cook D
Referenced in: 6 Publications (2003–2020)
Related Software: R; XGobi; GGobi; ggplot2; knitr; plotly; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

R6

Software Authors:   Winston Chang
Referenced in: 1 Publication (2016)
Related Software: Rcpp; R; magrittr; dplyr; rPython; ggplot2; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

RInside

Software Authors:   Dirk Eddelbuettel; Romain Francois
Referenced in: 3 Publications (2013–2015)
Related Software: R; Rcpp; Rserve; ggplot2; inline; CXXR; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

tergm

Software Authors:   Krivitsky PN, Handcock MS, et.al.
Referenced in: 2 Publications (2018–2019)
Related Software: R; ergm; statnet; network; gergm; latentnet; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

bayesDem

Software Authors:   Hana Sevcikova
Referenced in: 5 Publications (2014–2021)
Related Software: bayesTFR; bayesLife; bayesPop; R; Demography; WOA; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Cgl

Software Authors:   R. Lougee-Heimer
Referenced in: 6 Publications (2008–2020)
Related Software: CPLEX; CLP; Cbc; MIPLIB; MIPLIB2003; COIN-OR; …
Main Fields: Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

DBKGrad

Software Authors:   Angelo Mazza; Antonio Punzo
Referenced in: 3 Publications (2015–2019)
Related Software: R; KernSmoothIRT; np; minpack.lm; ggplot2; KernSmooth; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

DescTools

Software Authors:   Andri Signorell; et. al.
Referenced in: 4 Publications (2018–2022)
Related Software: R; ggplot2; VGAM; Rcpp; nortest; goftest; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Mathematics education (97-XX)

distrMod

Software Authors:   Matthias Kohl, Peter Ruckdeschel
Referenced in: 3 Publications (2010–2018)
Related Software: R; ROptEst; actuar; fitdistrplus; distrDoc; R.oo; …
Main Fields: Statistics (62-XX)

DynamO

Software Authors:   M. N. Bannerman, R. Sargant, L. Lue
Referenced in: 5 Publications (2015–2021)
Related Software: CHARMM; AMBER; DESMOND; NAMD; Gromacs; LAMMPS
Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX)

ergm.graphlets

Software Authors:   Omer Nebil Yaveroglu, Sean M. Fitzhugh, Maciej Kurant, Athina Markopoulou, Carter T. Butts, Natasa Przulj
Referenced in: 3 Publications (2018–2021)
Related Software: ergm; R; statnet; ergm.userterms; network; SIENA; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

LALSuite

Software Authors:   Mercer R A et al.
Referenced in: 1 Publication (2022)
Related Software: Python; FINDCHIRP; SWIG; Octave; OctApps; PyCBC; …
Main Fields: Algebraic geometry (14-XX); Statistics (62-XX); Quantum theory (81-XX)

lavaan.survey

Software Authors:   Daniel Oberski
Referenced in: 2 Publications (2013–2017)
Related Software: R; lavaan; Mplus; sem; OpenMx; Stata; …
Main Fields: Statistics (62-XX)

Matrix eQTL

Software Authors:   Andrey A. Shabalin
Referenced in: 4 Publications (2018–2020)
Related Software: R; TreeQTL; ASReml; IRanges; GenomicFeatures; GenomicRanges; …
Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)

nlmeU

Software Authors:   Andrzej Galecki, Tomasz Burzykowski
Referenced in: 5 Publications (2013–2021)
Related Software: R; S-PLUS; SASmixed; MASS (R); MEMSS; SAS; …
Main Fields: Statistics (62-XX); Statistical mechanics, structure of matter (82-XX); Operations research, mathematical programming (90-XX)

osDesign

Software Authors:   Haneuse, S., Saegusa, T., Chaterjee, N., Breslow, N.
Referenced in: 4 Publications (2012–2018)
Related Software: R; MCE; SAS/IML; SAS/STAT; twophase; SAS; …
Main Fields: Statistics (62-XX)