Mfold Software Authors: Zuker, M. Cited in: 38 Publications (2005–2021) Related Software: Sfold; KineFold; RNAshapes; Pfold; UNAFold; tRNAscan-SE; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
Rfam Software Authors: Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A Cited in: 24 Publications (2006–2019) Related Software: Infernal; R; Rnamotif; ViennaRNA; BLAT; KEGG; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)
ViennaRNA Software Authors: Lorenz, Ronny and Bernhart, Stephan H. and Höner zu Siederdissen, Christian and Tafer, Hakim and Flamm, Christoph and Stadler, Peter F. and Hofacker, Ivo L. Cited in: 23 Publications (2002–2022) Related Software: Rfam; VARNA; NNDB; RNAsubopt; KEGG; Mfold; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)
iSS-PseDNC Software Authors: Chen, W.; Feng, P. M.; Lin, H. Cited in: 16 Publications (2014–2019) Related Software: PseKNC; iRSpot-PseDNC; iCTX-Type; iRSpot-TNCPseAAC; iACP; pSuc-Lys; … Main Fields: Partial differential equations (35-XX); Statistics (62-XX); Computer science (68-XX)
tRNAscan-SE Software Authors: Lowe T.M., Eddy S.R Cited in: 13 Publications (1998–2016) Related Software: Mfold; Pfold; DINAMelt; Infernal; ARAGORN; EMBOSS; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
STAR Software Authors: Alexander Dobin, Carrie A. Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R. Gingeras Cited in: 13 Publications (2015–2021) Related Software: R; TopHat; edgeR; Bioconductor; Soap; FastQC; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)
Sfold Software Authors: Ding Y, Chan CY, Lawrence CE Cited in: 12 Publications (2006–2014) Related Software: Mfold; DINAMelt; Rfam; RSEARCH; RNAshapes; OligoArray; … Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX)
Infernal Software Authors: Nawrocki EP, Kolbe DL, Eddy SR Cited in: 7 Publications (2010–2018) Related Software: Rfam; R; ClustalW; Bioconductor; Mauve; Mugsy; … Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Computer science (68-XX)
Pfold Software Authors: Knudsen, B.; Hein, J. J. Cited in: 10 Publications (2004–2017) Related Software: Mfold; UNAFold; tRNAscan-SE; RNAshapes; NNDB; RNAKinetics; … Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)
NNDB Software Authors: Turner, DH; Mathews, DH Cited in: 10 Publications (2014–2021) Related Software: ViennaRNA; GitHub; TPstructure; MODENA; Pfold; Kraken; … Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Computer science (68-XX)
iMiRNA-PseDPC Software Authors: Liu, B.; Fang, L.; Liu, F.; Wang, X.; Chou, K. -C. Cited in: 10 Publications (2015–2019) Related Software: Pse-in-One; PseKNC; iPPI-Esml; iAMP-2L; iDNA-Methyl; iPro54-PseKNC; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
Lynx Software Authors: Ganesh, V., O’Donnell, C.W., Soos, M., Devadas, S., Rinard, M.C., Solar-Lezama, A. Cited in: 9 Publications (2013–2021) Related Software: MathCheck; Maple; FFTW; SMT-LIB; Mathematica; z3; … Main Fields: Combinatorics (05-XX); Number theory (11-XX); Geometry (51-XX)
Rnamotif Software Authors: T.J. Macke, D.J. Ecker, R.R. Gutell, D. Gautheret, D.A. Case, R. Sampath Cited in: 10 Publications (2001–2018) Related Software: Rfam; Palingol; BioGRID; HHpred; ARACNE; KEGG; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Quantum theory (81-XX)
RSEARCH Software Authors: Klein, R. J.; Eddy, S. R. Cited in: 6 Publications (2004–2008) Related Software: Rfam; Mfold; ClustalW; STRAL; T-coffee; MARNA; … Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Computer science (68-XX)
CONTRAfold Software Authors: Do CB, Woods DA, Batzoglou S Cited in: 6 Publications (2008–2015) Related Software: Mfold; Clustal X; ClustalW; RNAshapes; Rfam; Pfold; … Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Computer science (68-XX)
KineFold Software Authors: A. Xayaphoummine, T. Bucher, H. Isambert Cited in: 7 Publications (2011–2019) Related Software: Mfold; RNAsubopt; ViennaRNA; MS2distance; Tabu search; FFTbor2D; … Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)
UNAFold Software Authors: Markham, N. R., Zuker, M. Cited in: 6 Publications (2012–2020) Related Software: Mfold; Pfold; ViennaRNA; RNAplex; tRNAscan-SE; OligoArray; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)
Palingol Software Authors: – Cited in: 7 Publications (2001–2008) Related Software: Rnamotif; Rfam; Rnabob; DARN! Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
RNAforester Software Authors: Schirmer, Stefanie; Giegerich, Robert Cited in: 7 Publications (2011–2018) Related Software: Haskell; CONTRAlign; ViennaRNA; TED; ecceTERA; Locomotif; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
RNAlign Software Authors: F Corpet, B Michot Cited in: 6 Publications (2000–2010) Related Software: GPCR-GIA; EzyPred; FoldRate; Euk-mPLoc; HIVcleave; Signal-CF; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)
RNAshapes Software Authors: Steffen P., Voß B., Rehmsmeier M., Reeder J., Giegerich R Cited in: 6 Publications (2008–2015) Related Software: Mfold; Rfam; Pfold; CONTRAfold; DINAMelt; Sfold; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistical mechanics, structure of matter (82-XX)
RNAsoft Software Authors: Mirela Andronescu; Rosalía Aguirre-Hernández; Anne Condon; Holger H. Hoos Cited in: 4 Publications (2003–2009) Related Software: Mfold; Sfold; CMfinder Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
ARTS Software Authors: Oranit Dror, Ruth Nussinov, Haim Wolfson Cited in: 3 Publications (2008–2015) Related Software: DIAL; FR3D; SARSA; iPARTS; NAST; FRASS; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
CMfinder Software Authors: Z. Yao, Z. Weinberg, W.L. Ruzzo Cited in: 4 Publications (2008–2018) Related Software: Infernal; Rfam; pLoc-mHum; FoldRate; iDNA4mC; PROSPERous; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
FR3D Software Authors: M. Sarver, C. L. Zirbel, J. Stombaugh, A. Mokdad, N. B. Leontis Cited in: 3 Publications (2008–2015) Related Software: ARTS; DIAL; SARSA; DGL; PyTorch; VeRNAl; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
PseudoViewer3 Software Authors: Byun Y, Han K Cited in: 3 Publications (2007–2018) Related Software: ViennaRNA; R2R; jViz.Rna; Infernal; VARNA; Rfam; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Biology and other natural sciences (92-XX)
TPstructure Software Authors: Huang, Fenix W.D.; Reidys, Christian M. Cited in: 6 Publications (2016–2022) Related Software: NNDB; Pfold Main Fields: Combinatorics (05-XX); General topology (54-XX); Algebraic topology (55-XX)
VARNA Software Authors: K. Darty, A. Denise. Y. Ponty Cited in: 4 Publications (2012–2022) Related Software: ViennaRNA; Rfam; R2R; jViz.Rna; PseudoViewer3; Infernal; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Calculus of variations and optimal control; optimization (49-XX)
MODENA Software Authors: Taneda, A Cited in: 5 Publications (2016–2020) Related Software: Rfam; NNDB; Quicksort; RNAalifold; ViennaRNA; FFTbor; … Main Fields: Calculus of variations and optimal control; optimization (49-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)
PDB-REPRDB Software Authors: Noguchi, T.; Akiyama, Y. Cited in: 1 Publication (2009) Related Software: MODELLER; PROMOTIF; VMD; R; BLAST; PSI-BLAST; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
RNAfold Software Authors: Ivo L Hofacker, Walter Fontana, Sebastian Bonhoeffer, Peter F Stadler, Ronny Lorenz Cited in: 5 Publications (2012–2019) Related Software: RNAsubopt; ViennaRNA; PseudoViewer3; RLangGFun; Pfold; NNDB; … Main Fields: Combinatorics (05-XX); Calculus of variations and optimal control; optimization (49-XX); Probability theory and stochastic processes (60-XX)
3DNA Software Authors: Lu, X. -J.; Olson, W. K. Cited in: 2 Publications (2004–2006) Related Software: DGL; FR3D; PyTorch; VeRNAl; RNAMotifContrast; NetworkX; … Main Fields: Difference and functional equations (39-XX); Statistics (62-XX); Numerical analysis (65-XX)
jViz.Rna Software Authors: Wiese KC, Glen E, Vasudevan A Cited in: 3 Publications (2012–2015) Related Software: Mfold; RNAmute; R2R; PseudoViewer3; IPknot; Infernal; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)
MARCH-INSIDE Software Authors: González-Díaz H, Prado-Prado F, Ubeira FM Cited in: 4 Publications (2009–2014) Related Software: GPCR-CA; PRMLT; SMOTE; AmiGO; MIND-BEST; PISCES; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
MCQ4Structures Software Authors: Zok, Tomasz; Popenda, Mariusz; Szachniuk, Marta Cited in: 4 Publications (2014–2015) Related Software: MAMMOTH; FRASS; Bio3d; Jmol; iPARTS; DIAL; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)
NUCPLOT Software Authors: Nicholas M. Luscombe, Roman A. Laskowski, Janet M. Thornton Cited in: 3 Publications (1999–2016) Related Software: PROCHECK; IntelliGO; FUNC; Aber-OWL; Ontobee; PlantTFDB; … Main Fields: Statistics (62-XX); Classical thermodynamics, heat transfer (80-XX); Statistical mechanics, structure of matter (82-XX)
RNAKinetics Software Authors: Danilova, L. V., Pervouchine, D. D., Favorov, A. V., Mironov, A. A. Cited in: 2 Publications (2008–2013) Related Software: Pfold; Mfold; tRNAscan-SE; KineFold; Python; UNAFold; … Main Fields: Biology and other natural sciences (92-XX)
RNAstructure Software Authors: Reuter JS, Mathews DH Cited in: 3 Publications (2015–2020) Related Software: ViennaRNA; OligoWalk; TTA Lynx; CodonW; CodonPhyML; ntCard; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
FFTbor Software Authors: Senter, E; Sheikh, S; Dotu, I; Ponty, Y; Clote, P Cited in: 2 Publications (2016–2018) Related Software: ViennaRNA; NNDB; MODENA; MSMBuilder; ERD; KFOLD; … Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Computer science (68-XX)
IPknot Software Authors: Sato K, Kato Y, Hamada M, Akutsu T, Asai K Cited in: 3 Publications (2012–2017) Related Software: jViz.Rna; Mfold; GitHub; EMBOSS; Minimus; EMIRGE; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)
Locomotif Software Authors: Janina Reeder, Jens Reeder, Robert Giegerich Cited in: 2 Publications (2010–2014) Related Software: Rfam; Haskell; Dyna; RNAforester; KiCS2; Rnamotif; … Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
OligoWalk Software Authors: Lu ZJ, Mathews DH Cited in: 1 Publication (2015) Related Software: RNAstructure; EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
PatSearch Software Authors: Grillo G, Licciulli F, Liuni S et al Cited in: 2 Publications (2007–2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
PETcofold Software Authors: Seemann SE, Richter AS, Gesell T, Backofen R, Gorodkin J Cited in: 2 Publications (2012–2015) Related Software: RNAplex; RactIP; TIRNA; UNAFold; EMBOSS; Minimus; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
RNAalifold Software Authors: Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF Cited in: 3 Publications (2015–2016) Related Software: Rfam; CompaRNA; MODENA; Quicksort; iLoc-Euk; CentroidAlifold; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
STRAL Software Authors: Deniz Dalli, Andreas Wilm, Indra Mainz, Gerhard Steger Cited in: 1 Publication (2008) Related Software: MARNA; ClustalW; ProbCons; MAFFT; RSEARCH; Rfam; … Main Fields: Biology and other natural sciences (92-XX)
TurboFold Software Authors: A.O. Harmanci, G. Sharma, D.H. Mathews Cited in: 2 Publications (2014–2015) Related Software: iLoc-Euk; CentroidAlifold; MARNA; RNAalifold; CompaRNA; SIRENE; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
ARB Software Authors: Ludwig W, Strunk O, Westram R et al Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
CENTROIDFOLD Software Authors: Sato K, Hamada M, Asai K, Mituyama T Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
Cofolga Software Authors: Taneda, Akito Cited in: 2 Publications (2005–2008) Related Software: Mfold; ddbRNA; MARNA; PSoL; ProMiR II; Sfold; … Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
CompaRNA Software Authors: Tomasz Puton, Lukasz P. Kozlowski, Kristian M. Rother, Janusz M. Bujnicki Cited in: 2 Publications (2015) Related Software: RNAalifold; iLoc-Euk; CentroidAlifold; MARNA; TurboFold; EMBOSS; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
DORAEMON Software Authors: Pai, Priyadarshini P.; Dash, Tirtharaj; Mondal, Sukanta Cited in: 2 Publications (2017–2019) Related Software: BLAST; PSI-BLAST; EMBOSS; NPInter; Prnam-PC; PINGU; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
FRASS Software Authors: Kirillova S, Tosatto S, Carugo O Cited in: 1 Publication (2014) Related Software: DIAL; MAMMOTH; Bio3d; MCQ4Structures; Jmol; iPARTS; … Main Fields: Biology and other natural sciences (92-XX)
LocARNAscan Software Authors: Will S, Siebauer MF, Heyne S et al Cited in: 2 Publications (2017–2018) Related Software: BLAT; MergeAlign; MEME; DIALIGN; Footprinter; TreeWiz; … Main Fields: General and overarching topics; collections (00-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
MolProbity Software Authors: Davis, I. W., Leaver-Fay, A., Chen, V. B., Block, J. N., Kapral, G. J., Wang, X., Murray, L. W., Arendall, W. B., Snoeyink, J., Richardson, J. S. et al. Cited in: 1 Publication (2018) Related Software: GeoPCA Main Fields: Differential geometry (53-XX); Statistics (62-XX)
NucPosPred Software Authors: Jia, Cangzhi; Yang, Qing; Zou, Quan Cited in: 2 Publications (2018–2019) Related Software: Prnam-PC; 2L-piRNA; iDNA6mA-PseKNC; iKcr-PseEns; iPromoter-2L; iRSpot-EL; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
PGTdb Software Authors: Huang SL, Wu LC, Liang HK, Pan KT, Horng JT, Ko MT Cited in: 1 Publication (2007) Related Software: KEGG; AAindex Main Fields: Biology and other natural sciences (92-XX)
PolyA_DB Software Authors: Zhang H, Hu J, Recce M, Tian B Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
ProbKnot Software Authors: S. Bellaousov, D.H. Mathews Cited in: 2 Publications (2012–2014) Related Software: HotKnots; SIRENE; UniProt; WebGestalt; KDDONTO; Protege; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)
R-CHIE Software Authors: Lai D, Proctor JR, Zhu JYA, Meyer IM Cited in: 2 Publications (2015–2020) Related Software: Algorithm 457; G-MAPSEQ; EMBOSS; Minimus; EMIRGE; ViennaRNA; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Operations research, mathematical programming (90-XX)
R-Coffee Software Authors: Wilm A, Higgins DG, Notredame C Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
R2R Software Authors: Weinberg Z, Breaker RR Cited in: 1 Publication (2015) Related Software: jViz.Rna; PseudoViewer3; Infernal; VARNA; Rfam; EMBOSS; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
RNA FRABASE Software Authors: Popenda, M., Blazewicz, M., Szachniuk, M., Adamiak, R.W. Cited in: 1 Publication (2015) Related Software: apcluster; clusfind; MCQ4Structures; APCluster Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Rnabob Software Authors: – Cited in: 2 Publications (2007–2008) Related Software: Rnamotif; Rfam; Palingol; DARN! Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
RNACluster Software Authors: – Cited in: 1 Publication (2017) Related Software: TreeWiz; starBase; LocARNAscan; COMPASS; RNAstrand; NoFold; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
RNACompress Software Authors: Liu, Q.; Yang, Y.; Chen, C.; Bu, J.; Zhang, Y.; Ye, X. Cited in: 1 Publication (2012) Related Software: CDNA; DNACompress; ProCKSI; clustervalidation; NeoBio; ARACNE; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
RNAdraw Software Authors: Ole Matzura, Anders Wennborg Cited in: 1 Publication (2006) Related Software: Clustal X; MINITAB Main Fields: Combinatorics (05-XX); Quantum theory (81-XX); Biology and other natural sciences (92-XX)
RNAexinv Software Authors: Avihoo A, Churkin A, Barash D Cited in: 2 Publications (2015–2017) Related Software: NNDB; MODENA; EMBOSS; Minimus; EMIRGE; ViennaRNA; … Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
RNAG Software Authors: Wei D, Alpert LV, Lawrence CE Cited in: 2 Publications (2015–2016) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
RNAmute Software Authors: Churkin A, Gabdank I, Barash D Cited in: 2 Publications (2012–2015) Related Software: jViz.Rna; Mfold; RDMAS; miRBase; EMBOSS; Minimus; … Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Biology and other natural sciences (92-XX)
RNAspa Software Authors: Horesh Y, Doniger T, Michaeli S, Unger R Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
RnaViz Software Authors: de Rijk, P.; Wuyts, J.; de Wachter, R. Cited in: 1 Publication (2005) Related Software: CMfinder; R2R; jViz.Rna; PseudoViewer3; Infernal; VARNA; … Main Fields: Biology and other natural sciences (92-XX)
RSeQC Software Authors: Wang L, Wang S, Li W Cited in: 1 Publication (2015) Related Software: BUSCO; TRINITY; Bowtie 2; Python; GUESSmyLT; EMBOSS; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
scater Software Authors: McCarthy DJ, Campbell KR, Lun ATL, Willis QF Cited in: 2 Publications (2019–2022) Related Software: t-SNE; knitr; scRNAseq; tourr; R; CIDR; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
TIRNA Software Authors: Montaseri, Soheila; Moghadam-Charkari, Nasrollah; Zare-Mirakabad, Fatemeh Cited in: 2 Publications (2012–2015) Related Software: RNAplex; PETcofold; RactIP; UNAFold; iMethyl-PseAAC; iCTX-Type; … Main Fields: Biology and other natural sciences (92-XX)
WAR Software Authors: Torarinsson E, Lindgreen S Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
AC-PCA Software Authors: Z. Lin, C. Yang, Y. Zhu, J. C. Duchi, Y. Fu, Y. Wang, B. Jiang, M. Zamanighomi, X. Xu, M. Li, N. Sestan, H. Zhao, W. H. Wong Cited in: 1 Publication (2016) Related Software: Matlab; GitHub; R Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
ASPRAlign Software Authors: Michela Quadrini, Luca Tesei, Emanuela Merelli Cited in: 1 Publication (2022) Related Software: – Main Fields: Measure and integration (28-XX); Biology and other natural sciences (92-XX)
Assemble Software Authors: Jossinet F, Ludwig TE, Westhof E Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
CARNA Software Authors: Sorescu DA, Mohl M, Mann M et al Cited in: 1 Publication (2017) Related Software: TreeWiz; starBase; LocARNAscan; COMPASS; RNAstrand; NoFold; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
CentroidAlifold Software Authors: Hamada et al. Cited in: 1 Publication (2015) Related Software: iLoc-Euk; MARNA; TurboFold; RNAalifold; CompaRNA Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
COFOLD Software Authors: Proctor JR, Meyer IM Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
DAFS Software Authors: Sato K, Kato Y, Akutsu T, Asai K, Sakakibara Y Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
Densityfold Software Authors: Alkan, Can; Karakoc, Emre; Sahinalp, S.Cenk; Unrau, Peter; Ebhardt, H.Alexander; Zhang, Kaizhong; Buhler, Jeremy Cited in: 1 Publication (2006) Related Software: – Main Fields: Biology and other natural sciences (92-XX)
ERD Software Authors: Esmaili-Taheri, A; Ganjtabesh, M Cited in: 1 Publication (2018) Related Software: NNDB; ViennaRNA; MODENA; FFTbor; MSMBuilder; KFOLD; … Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Computer science (68-XX)
G4Catchall Software Authors: Doluca, Osman Cited in: 1 Publication (2019) Related Software: Quadfinder; QGRS-H Predictor; QGRS mapper; pqsfinder; G4Hunter; GitHub Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
GraphClust Software Authors: Heyne S, Costa F, Rose D et a Cited in: 1 Publication (2017) Related Software: TreeWiz; starBase; LocARNAscan; COMPASS; RNAstrand; NoFold; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
HieRFIT Software Authors: Kaymaz, Y., Ganglberger, F., Tang, M., Fernandez-Albert, F., Lawless, N., Sackton, T.B Cited in: 1 Publication (2022) Related Software: SGL; DropLasso; seagull; msgl; biglasso; AS 136; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
HmmSeq Software Authors: Cui, Shiqi; Guha, Subharup; Ferreira, Marco A.R.; Tegge, Allison N. Cited in: 1 Publication (2015) Related Software: DAVID; BaySeq; CNAmet; tmvtnorm; edgeR; Bioconductor; … Main Fields: Statistics (62-XX)
KFOLD Software Authors: Dykeman, EC Cited in: 1 Publication (2018) Related Software: NNDB; ViennaRNA; MODENA; FFTbor; MSMBuilder; ERD; … Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Computer science (68-XX)
KnotSeeker Software Authors: Jana Sperschneider; Amitava Datta Cited in: 1 Publication (2011) Related Software: gff2ps; HAPLORE; GRIL; MrBayes; PAUP*; MAVisto; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
MATHT Software Authors: Song, Wei; Liu, Huaping; Wang, Jiajia; Kong, Yan; Yin, Xia; Zang, Weidong Cited in: 1 Publication (2018) Related Software: gcrma; Galaxy; SolexaQA; miRecords; DNMAD; FunCoup; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
MINT Software Authors: A. Górska, M. Jasiński, J. Trylska Cited in: 1 Publication (2016) Related Software: VMD; VARNA; AMBER Main Fields: Biology and other natural sciences (92-XX)
ModeRNA Software Authors: Rother M et al Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
MS2distance Software Authors: Amir H. Bayegan, Peter Clote Cited in: 1 Publication (2017) Related Software: RNAsubopt; ViennaRNA; KineFold; Tabu search Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
NoFold Software Authors: Middleton SA, Kim J Cited in: 1 Publication (2017) Related Software: TreeWiz; starBase; LocARNAscan; COMPASS; RNAstrand; RNACluster; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
patteRNA Software Authors: Mirko Ledda; Sharon Aviran Cited in: 1 Publication (2020) Related Software: RMSprop; NNDB; ViennaRNA; reactIDR; rna-state-inf; GitHub; … Main Fields: Biology and other natural sciences (92-XX)
PETfold Software Authors: Seemann SE, Menzel P, Backofen R, Gorodkin J Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
PMFastR Software Authors: Dan DeBlasio, Jocelyne Braund, Shaojie Zhang Cited in: 1 Publication (2017) Related Software: ProbCons; UniProt; Opal; LEON; RASCAL; GUIDANCE2; … Main Fields: Biology and other natural sciences (92-XX)
PPfold Software Authors: Sukosd Z, Knudsen B, Kjems J, Pedersen CN Cited in: 1 Publication (2015) Related Software: EMBOSS; Minimus; EMIRGE; ViennaRNA; TagCleaner; OligoWalk; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)