Matlab Cited in 13,338 Documents (1982–2024) Software Authors: MathWorks Inc Related Software: Simulink; Maple; LMI toolbox; … Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX); …
CGAL Cited in 384 Documents (2000–2023) Software Authors: CGAL Editorial Board Related Software: LEDA; 2D triangulations; 2D Arrangement; … Main Fields: Convex and discrete geometry (52-XX); Numerical analysis (65-XX); Computer science (68-XX); …
FGb Cited in 249 Documents (1998–2023) Software Authors: J.-C. Faugère Related Software: Magma; SINGULAR; Maple; … Main Fields: Number theory (11-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX); …
DSTool Cited in 104 Documents (1992–2022) Software Authors: J Guckenheimer, BA Meloon, MR Myers, FJ Wicklin, Michael Patra Related Software: AUTO; AUTO-86; HomCont; … Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); …
Bocop Cited in 55 Documents (2013–2023) Software Authors: Bonnans, F.J., Martinon, P., Grélard, V. Related Software: Ipopt; SOCS; minpack; … Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); …
BIOCHAM Cited in 45 Documents (2005–2022) Software Authors: Chabrier, N., Fages, F., Soliman, S. Related Software: Bio-PEPA; PRISM; PEPA; … Main Fields: Mathematical logic and foundations (03-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX); …
PDB2PQR Cited in 36 Documents (2006–2023) Software Authors: T. Dolinsky, J. Nielsen, A. McCammon, N. Baker Related Software: APBS; MIBPB; TABI; … Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX); …
iLoc-Euk Cited in 37 Documents (2011–2019) Software Authors: Chou, K. -C.; Wu, Z. -C.; Xiao, X. Related Software: iLoc-Hum; Cell-PLoc; iLoc-Virus; … Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Computer science (68-XX); …
Breach Cited in 31 Documents (2011–2022) Software Authors: Alexandre Donzé Related Software: S-TaLiRo; Flow*; SpaceEx; … Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX); …
Knut Cited in 31 Documents (2007–2022) Software Authors: Szalai, Robert Related Software: DDE-BIFTOOL; PDDE-CONT; MATCONT; … Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); …
REVEAL Cited in 24 Documents (2003–2022) Software Authors: Liang, S., Fuhrman, S., Somogyi, R Related Software: KEGG; R; BoolNet; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX); …
SIESTA Cited in 25 Documents (2006–2023) Software Authors: Soler J.S., Artacho E., Gale J.D., Garcia A., Junquera J., Ordejon P., Sanchez-Portal D Related Software: ONETEP; ABINIT; Quantum Espresso; … Main Fields: Approximations and expansions (41-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); …
Plant-mPLoc Cited in 26 Documents (2010–2019) Software Authors: Chou, K. -C.; Shen, H. -B. Related Software: Cell-PLoc; Euk-mPLoc; iLoc-Euk; … Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX); …
BioBayes Cited in 20 Documents (2008–2022) Software Authors: Mark Girolami; Vladislav Vyshemirsky Related Software: PRMLT; deGradInfer; BayesDA; … Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX); …
Reactome Cited in 14 Documents (2008–2022) Software Authors: G. Joshi-Tope M. Gillespie; I. Vastrik; P. D'Eustachio; E. Schmidt; B. de Bono; B. Jassal; G.R. Gopinath; G.R. Wu; L. Matthews; S. Lewis; E. Birney; L. Stein Related Software: KEGG; Bioconductor; MetaCyc; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX); …
BlenX Cited in 18 Documents (2008–2020) Software Authors: Lorenzo Dematté; Corrado Priami; Alessandro Romanel Related Software: Bio-PEPA; PRISM; PEPA; … Main Fields: Mathematical logic and foundations (03-XX); Category theory; homological algebra (18-XX); Computer science (68-XX); …
Celldesigner Cited in 17 Documents (2007–2019) Software Authors: Funahashi, A., Morohashi, M., Kitano, H., Tanimura, N. Related Software: KEGG; MetaCyc; BIOCHAM; … Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX); …
iLoc-Animal Cited in 20 Documents (2013–2019) Software Authors: Lin, W. -Z.; Fang, J. -A.; Xiao, X.; Chou, K. -C. Related Software: iLoc-Hum; iRSpot-PseDNC; iLoc-Virus; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
sbtoolbox Cited in 12 Documents (2009–2019) Software Authors: Henning Schmidt; Mats Jirstrand Related Software: Matlab; COPASI; SBML-SAT; … Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Calculus of variations and optimal control; optimization (49-XX); …
ESPResSo Cited in 15 Documents (2008–2021) Software Authors: Limbach, H.-J.; Arnold, A.; Mann, B. A.; Holm, C Related Software: NAMD; Gromacs; ESPResSo++; … Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX); …
GenSSI Cited in 18 Documents (2013–2023) Software Authors: Chis O, Banga J, Balsa-Canto E Related Software: DAISY; SIAN; COMBOS; … Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); …
iLoc-Plant Cited in 18 Documents (2012–2019) Software Authors: Wu, Z. -C.; Xiao, X.; Chou, K. -C. Related Software: iLoc-Virus; iLoc-Euk; iLoc-Hum; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX); …
libSBML Cited in 6 Documents (2009–2022) Software Authors: B. J. Bornstein, S. M. Keating, A. Jouraku, M. Hucka Related Software: COPASI; SimpleSBML; BioModels; … Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX); …
Data2Dynamics Cited in 9 Documents (2018–2022) Software Authors: Raue A, Steiert B, Schelker M, Kreutz C, Maiwald T, Hass H, et al Related Software: AMIGO; COPASI; PESTO; … Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); …
Siconos Cited in 13 Documents (2010–2022) Software Authors: Siconos development team Related Software: PATH Solver; pvlib; CasADi; … Main Fields: Numerical analysis (65-XX); Mechanics of particles and systems (70-XX); Mechanics of deformable solids (74-XX); …
SW1PerS Cited in 13 Documents (2015–2023) Software Authors: J. A. Perea, A. Deckard, S. B. Haase, J. Harer Related Software: TDA; Ripser; javaPlex; … Main Fields: Dynamical systems and ergodic theory (37-XX); Algebraic topology (55-XX); Statistics (62-XX); …
AMIGO Cited in 8 Documents (2015–2022) Software Authors: Eva Balsa-Canto; Julio R. Banga Related Software: Data2Dynamics; COPASI; PESTO; … Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX); …
COMBOS Cited in 12 Documents (2017–2022) Software Authors: Nicolette Meshkat, Christine Er-zhen Kuo, Joseph DiStefano, III Related Software: DAISY; SIAN; GenSSI; … Main Fields: Mathematical logic and foundations (03-XX); Ordinary differential equations (34-XX); Statistics (62-XX); …
BiGG Cited in 9 Documents (2011–2020) Software Authors: J. Schellenberger, J.O. Park, T.M. Conrad, B.O. Palsson Related Software: KEGG; efmtool; Metatool; … Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Computer science (68-XX); …
Bio-SPICE Cited in 8 Documents (2005–2014) Software Authors: Garvey TD, Lincoln P, Pedersen CJ et al Related Software: COPASI; BioModels; Taverna; … Main Fields: History and biography (01-XX); Numerical analysis (65-XX); Computer science (68-XX); …
IDP3 Cited in 9 Documents (2015–2020) Software Authors: Bruynooghe, Maurice; Blockeel, Hendrik; Bogaerts, Bart; De Cat, Broes; De Pooter, Stef; Jansen, Joachim; Labarre, Anthony; Ramon, Jan; Denecker, Marc; Verwer, Sicco Related Software: clasp; WASP; DLV; … Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX)
SpiCO Cited in 10 Documents (2007–2020) Software Authors: Kuttler, Céline; Lhoussaine, Cédric; Niehren, Joachim Related Software: Bio-PEPA; BioNetGen; BlenX; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
Sobol Cited in 8 Documents (2018–2022) Software Authors: Zhang, X.-Y., Trame, M. N., Lesko, L. J., Schmidt, S Related Software: Matlab; NumPy; MOEA; … Main Fields: Statistics (62-XX); Fluid mechanics (76-XX); Operations research, mathematical programming (90-XX); …
ABC-SysBio Cited in 6 Documents (2012–2022) Software Authors: Liepe, J., Barnes, C., Cule, E., Erguler, K., Kirk, P., Toni, T., Stumpf, M. P. H. Related Software: BioBayes; astroABC; EasyABC; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …
ADAM Cited in 8 Documents (2011–2020) Software Authors: Hinkelmann F, Brandon M, Guang B, McNeill R, Blekherman G, Veliz-Cuba A, Laubenbacher R Related Software: Ginsim; Macaulay2; BoolNet; … Main Fields: Algebraic geometry (14-XX); Linear and multilinear algebra; matrix theory (15-XX); Biology and other natural sciences (92-XX); …
MultiLoc2 Cited in 6 Documents (2011–2014) Software Authors: Blum, T.; Briesemeister, S.; Kohlbacher, O. Related Software: MultiLoc; Cell-PLoc; iLoc-Euk; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
HybridSal Cited in 4 Documents (2009–2020) Software Authors: Tiwari, A. Related Software: HSolver; RSOLVER; Yices; … Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX); …
MEIGO Cited in 2 Documents (2010–2019) Software Authors: Egea JA, Henriques D, Cokelaer T, Villaverde AF, MacNamara A, Danciu DP, Banga JR, Saez-Rodriguez J. Related Software: COPASI; Data2Dynamics; AMIGO; … Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
pLoc_bal-mGneg Cited in 7 Documents (2018–2019) Software Authors: Cheng, Xiang; Xiao, Xuan; Chou, Kuo-Chen Related Software: pLoc-mGneg; iPromoter-2L; iRSpot-EL; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
PoCaB Cited in 7 Documents (2012–2015) Software Authors: Samal, Satya Swarup; Errami, Hassan; Weber, Andreas Related Software: BioModels; polymake; z3; … Main Fields: Algebraic geometry (14-XX); Ordinary differential equations (34-XX); Numerical analysis (65-XX); …
RuleBender Cited in 5 Documents (2015–2021) Software Authors: Xu, W., Smith, A. M., Faeder, J. R., Marai, G. E. Related Software: BioNetGen; PORGY; MOSBIE; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
SBML-SAT Cited in 7 Documents (2009–2021) Software Authors: Zi Z1, Zheng Y, Rundell AE, Klipp E. Related Software: SensSB; sbtoolbox; Matlab; … Main Fields: Ordinary differential equations (34-XX); Statistics (62-XX); Biology and other natural sciences (92-XX); …
STOCHSIMGPU Cited in 6 Documents (2012–2022) Software Authors: Klingbeil, G.; Erban, R.; Giles, M.; Maini, P. K. Related Software: WBR-2019; BayesDA; MLMCandMultifidelityForABC; … Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX); …
ABNER Cited in 0 Documents Software Authors: Burr Settles Related Software: iHOP; ProMiner; GENIA corpus; … Main Fields: –
AgentCell Cited in 6 Documents (2007–2020) Software Authors: Thierry Emonet, Charles M. Macal, Michael J. North, Charles E. Wickersham, Philippe Cluzel Related Software: BacSim; FreeFem++; STOCHSIM Main Fields: Partial differential equations (35-XX); Biology and other natural sciences (92-XX)
HRSSA Cited in 6 Documents (2016–2019) Software Authors: Marchetti, Luca; Priami, Corrado; Thanh, Vo Hong Related Software: HSimulator; COPASI; STEPS; … Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX); …
Lyap Cited in 6 Documents (1997–2021) Software Authors: F. Sattin Related Software: Matlab; mctoolbox; SLICOT; … Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); …
Polynome Cited in 6 Documents (2010–2017) Software Authors: Dimitrova, Elena; García-Puente, Luis David; Hinkelmann, Franziska; Jarrah, Abdul S.; Laubenbacher, Reinhard; Stigler, Brandilyn; Stillman, Michael; Vera-Licona, Paola Related Software: ADAM; Macaulay2; SageMath; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …
ProMoT Cited in 5 Documents (2000–2021) Software Authors: F Tränkle, M Zeitz, M Ginkel; Waschler, Roland; Angeles-Palacios, Odon; Ginkel, Martin; Kienle, Achim Related Software: TABASCO; lpSolve; SUNDIALS; … Main Fields: General and overarching topics; collections (00-XX); History and biography (01-XX); Partial differential equations (35-XX); …
Sbmltoolbox Cited in 4 Documents (2010–2016) Software Authors: Sarah M. Keating; Benjamin J. Bornstein; Andrew Finney; Michael Hucka Related Software: sbtoolbox; COBRA Toolbox; Algorithm 432; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
smfsb Cited in 3 Documents (2012–2019) Software Authors: Darren Wilkinson Related Software: pomp; R; Matlab; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX); …
Bioclipse Cited in 0 Documents Software Authors: Spjuth O, Alvarsson J, Berg A, Eklund M, Kuhn S, Masak C, Torrance G, Wagener J, Willighagen E, Steinbeck C, Wikberg J. Related Software: CDK; Taverna; BioMOBY; … Main Fields: –
COBRApy Cited in 3 Documents (2015–2020) Software Authors: Ali Ebrahim, Joshua A Lerman, Bernhard O Palsson, Daniel R Hyduke Related Software: CPLEX; Gurobi; MIMOSA2; … Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
CRNreals Cited in 5 Documents (2014–2022) Software Authors: G. Szederkényi, J.R. Banga, A.A. Alonso Related Software: GLPK; YALMIP; CLP; … Main Fields: Ordinary differential equations (34-XX); Classical thermodynamics, heat transfer (80-XX); Operations research, mathematical programming (90-XX); …
ProbCD Cited in 0 Documents Software Authors: Ricardo Vêncio, Ilya Shmulevich Related Software: R; GOPET; BayGO; … Main Fields: –
QNSTOP Cited in 5 Documents (2016–2022) Software Authors: B. D. Amos, D. R. Easterling, L. T. Watson, W. I. Thacker, B. S. Castle, M. W. Trosset Related Software: UOBYQA; DELAUNAYSPARSE; VTDIRECT95; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)
SensSB Cited in 4 Documents (2012–2020) Software Authors: Rodriguez-Fernandez, M., Banga, J.R. Related Software: Matlab; SBML-SAT; COPASI; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)
SOSlib Cited in 3 Documents (2012–2019) Software Authors: Lu J, Muller S, Machné R, Flamm C Related Software: SUNDIALS; COPASI; BioBayes; … Main Fields: Dynamical systems and ergodic theory (37-XX); Biology and other natural sciences (92-XX)
DOTcvpSB Cited in 3 Documents (2014–2017) Software Authors: Tomáš Hirmajer; Eva Balsa-Canto; Julio R Banga Related Software: DOTcvp Main Fields: Calculus of variations and optimal control; optimization (49-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)
EPE Cited in 4 Documents (2009–2015) Software Authors: Demin, Oleg; Goryanin, Igor Related Software: DBSolve Main Fields: Combinatorics (05-XX); Computer science (68-XX); Statistical mechanics, structure of matter (82-XX); …
Gaggle Cited in 0 Documents Software Authors: P.T. Shannon, D.J. Reiss, R. Bonneau, N.S. Baliga Related Software: GOPET; BayGO; GOLEM; … Main Fields: –
HybridSystemsLab Cited in 4 Documents (2021–2022) Software Authors: Sanfelice, Ricardo G. Related Software: HyEQ; YALMIP; Matlab Main Fields: Systems theory; control (93-XX)
libRoadRunner Cited in 1 Document (2017) Software Authors: Somogyi, E. T. et al. Related Software: tellurium; Python; SUNDIALS; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
MABSys Cited in 4 Documents (2010–2016) Software Authors: Lemaire, François; Ürgüplü, Asli Related Software: RegularChains; Indiff; AIDA; … Main Fields: Commutative algebra (13-XX); Real functions (26-XX); Ordinary differential equations (34-XX); …
MMG Cited in 1 Document (2019) Software Authors: Sanguinetti G, Noirel J, Wright PC Related Software: GeneNetWeaver; SIRENE; Matrix eQTL; … Main Fields: Biology and other natural sciences (92-XX)
OPERAS Cited in 2 Documents (2009–2017) Software Authors: Stamatopoulou, Ioanna; Kefalas, Petros; Gheorghe, Marian Related Software: NetLogo Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); …
Path2Models Cited in 4 Documents (2015–2019) Software Authors: Büchel F, Rodriguez N, Swainston N, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van˜Iersel M, Keating S, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dräger A, Novére NL Related Software: PRMLT; SINDy; Hybrid-SINDy; … Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Numerical analysis (65-XX); …
PEtab Cited in 1 Document (2020) Software Authors: Leonard Schmiester, Yannik Schälte, Frank T. Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez, Lukas Refisch, Marcus Rosenblatt, Paul L. Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl Related Software: Data2Dynamics; COPASI; AMIGO; … Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)
TinkerCell Cited in 2 Documents (2014–2015) Software Authors: Deepak Chandran, Frank T. Bergmann, Herbert M. Sauro Related Software: TABASCO; lpSolve; SUNDIALS; … Main Fields: Ordinary differential equations (34-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
ARACNe-AP Cited in 2 Documents (2018–2019) Software Authors: Lachmann A, Giorgi FM, Lopez G, Califano A. Related Software: pycit; infotheory; IDTxl; … Main Fields: Biology and other natural sciences (92-XX)
BiNoM Cited in 2 Documents (2012–2015) Software Authors: Andrei Zinovyev; Eric Viara; Laurence Calzone; Emmanuel Barillot Related Software: Pathway Commons; CellPublisher; Ginsim; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
BioTapestry Cited in 3 Documents (2011–2022) Software Authors: Institute for Systems Biology (ISB); William Longabaugh; Eric Davidson; Hamid Bolouri; et al. Related Software: Virtual Cell; Bio-PEPA; PAUP*; … Main Fields: General and overarching topics; collections (00-XX); Ordinary differential equations (34-XX); Computer science (68-XX); …
CellMiner Cited in 1 Document (2016) Software Authors: Reinhold WC, Sunshine M, Liu H, Varma S, Kohn KW, Morris J, Doroshow J, Pommier Y Related Software: R; pense; robustHD; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
CMBSlib Cited in 3 Documents (2005–2008) Software Authors: Sylvian Soliman, François Fages Related Software: BIOCHAM; KEGG; Cellerator; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)
JSBML Cited in 3 Documents (2012–2021) Software Authors: Dräger, A., Rodriguez, N., Dumousseau, M., Dörr, A., Wrzodek, C., Novère, N.L., Zell, A., Hucka, M. Related Software: KEGG; MetaCyc; polymake; … Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX); …
MI-GRAAL Cited in 2 Documents (2013–2020) Software Authors: Oleksii Kuchaiev; Natasa Przulj Related Software: IsoRankN; IsoRank; Natalie; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX); …
ModSpec Cited in 3 Documents (2013–2016) Software Authors: D. Amsallem; J. Roychowdhury Related Software: Rallpacks Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
Morpheus Cited in 2 Documents (2021–2023) Software Authors: Starruß, J., De~Back, W., Brusch, L., Deutsch, A. Related Software: CellSys; Biocellion; PhysiCell; … Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX); …
NETASA Cited in 3 Documents (2005–2018) Software Authors: Ahmad, S.; Gromiha, M. M. Related Software: RBSURFpred; OnD-CRF; Hum-mPLoc; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX); Information and communication theory, circuits (94-XX)
NIMEFI Cited in 2 Documents (2017–2020) Software Authors: Ruyssinck, J., Huynh-Thu, V.A., Geurts, P., Dhaene, T., Demeester, P., Saeys, Y. Related Software: Espresso; InterpretML; Alibi Explain; … Main Fields: Statistics (62-XX); Computer science (68-XX)
OKVAR-Boost Cited in 3 Documents (2013–2016) Software Authors: Lim N, Senbabaoglu Y, Michailidis G, d'Alché-Buc F. Related Software: ARACNE; fda (R); GeneNetWeaver; … Main Fields: Operator theory (47-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX); …
PyBioNetFit Cited in 1 Document (2020) Software Authors: Mitra, ED; Suderman, R.; Colvin, J.; Ionkov, A.; Hu, A.; Sauro, HM; Posner, RG; Hlavacek, WS Related Software: COPASI; AMIGO; tellurium; … Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)
PyNCT Cited in 3 Documents (2015–2021) Software Authors: Draelants, Delphine; Kłosiewicz, Przemysław; Broeckhove, Jan; Vanroose, Wim Related Software: LOCA; NumPy; Python; … Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); …
pyPESTO Cited in 1 Document (2020) Software Authors: Schmiester, Leonard; Weindl, Daniel; Hasenauer, Jan Related Software: AMIGO; Data2Dynamics; PEtab; … Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)
rBioNet Cited in 2 Documents (2012–2016) Software Authors: Thorleifsson, S.G.; Thiele, I. Related Software: COBRA Toolbox; Sbmltoolbox Main Fields: Biology and other natural sciences (92-XX)
SBRML Cited in 1 Document (2013) Software Authors: Dada, JO; Spasić, I; Paton, NW; Mendes, P Related Software: Virtual Cell; KEGG; COPASI; … Main Fields: Dynamical systems and ergodic theory (37-XX); Biology and other natural sciences (92-XX)
SloppyCell Cited in 3 Documents (2009–2016) Software Authors: Ryan Gutenkunst Related Software: Python; ObservabilityTest; GenSSI; … Main Fields: Dynamical systems and ergodic theory (37-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)
SwisTrack Cited in 3 Documents (2008–2016) Software Authors: Lochmatter, T., Roduit, P., Cianci, C., Correll, N., Jacot, J., Martinoli, A. Related Software: COPL_DSDP Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX); …
SYSBIONS Cited in 2 Documents (2018–2019) Software Authors: Johnson, R, Kirk, P, Stumpf, M P Related Software: BioBayes; abc; BCM; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
anNET Cited in 1 Document (2011) Software Authors: Nicola Zamboni, Anne Kümmel, Matthias Heinemann Related Software: LINDO; expa; CPLEX; … Main Fields: Numerical analysis (65-XX); Classical thermodynamics, heat transfer (80-XX)
AutoClass@IJM Cited in 1 Document (2018) Software Authors: Achcar, Fiona; Camadro, Jean-Michel; Mestivier, Denis Related Software: ZIFA; AutoClass; t-SNE; … Main Fields: Statistics (62-XX); Computer science (68-XX)
BioGrapher Cited in 2 Documents (2015–2016) Software Authors: Viswanathan, Rama; Liang, Sijia; Yang, Yang; Jungck, John R. Related Software: JavaBENZER; Excel; VBA; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
BioPreDyn-bench Cited in 2 Documents (2019–2021) Software Authors: Villaverde AF, Henriques D, Smallbone K, Bongard S, Schmid J, Cicin-Sain D, Crombach A, Saez-Rodriguez J, Mauch K, Balsa-Canto E, Mendes P, Jaeger J, Banga JR Related Software: PESTO; Data2Dynamics; SUNDIALS; … Main Fields: Ordinary differential equations (34-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX); …
BioSimulator.jl Cited in 0 Documents Software Authors: Alfonso Landeros, Timothy Stutz, Kevin L. Keys, Alexander Alekseyenko, Janet S. Sinsheimer, Kenneth Lange, Mary Sehl Related Software: DifferentialEquations.jl; Julia; DiffEqFlux; … Main Fields: –
CellPublisher Cited in 1 Document (2015) Software Authors: L.A. Flórez, C.R. Lammers, R. Michna, J. Stülke Related Software: Pathway Commons; BiNoM; Ginsim; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
Chromar Cited in 2 Documents (2018–2022) Software Authors: Honorato-Zimmer, Ricardo; Millar, Andrew J.; Plotkin, Gordon D.; Zardilis, Argyris Related Software: PySB; BioNetGen; APL; … Main Fields: Biology and other natural sciences (92-XX)
Cryo-EM Cited in 2 Documents (2020–2022) Software Authors: Eva Nogales, Sjors H.W. Scheres Related Software: RELION; cryoSPARC; FINUFFT; … Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Biology and other natural sciences (92-XX); …
DBSolve Cited in 2 Documents (2009–2016) Software Authors: – Related Software: GNA; COPASI; EPE Main Fields: Ordinary differential equations (34-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
explorase Cited in 0 Documents Software Authors: Michael Lawrence, Eun-kyung Lee, Dianne Cook, Jihong Kim, Hogeun An, Dongshin Kim Related Software: RGtk2; rattle; limma; … Main Fields: –
Gillespie.jl Cited in 0 Documents Software Authors: Frost, Simon D.W. Related Software: GillespieSSA; Julia; JuMP; … Main Fields: –