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Found 1,551 Software Packages (Results 1–100)

Matlab

Software Authors:   MathWorks Inc
Referenced in: 12,958 Publications (1982–2024)
Related Software: Simulink; LMI toolbox; Maple; MATLAB ODE suite; ode23; ode45; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

Gmsh

Software Authors:   Christophe Geuzaine, Jean-François Remacle
Referenced in: 772 Publications (2003–2022)
Related Software: FEniCS; PETSc; ParaView; MUMPS; FreeFem++; deal.ii; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

SparseMatrix

Software Authors:   Davis, Timothy A; Hu, Yifan
Referenced in: 739 Publications (1997–2022)
Related Software: LAPACK; mctoolbox; Matlab; METIS; ILUT; HSL; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

Matplotlib

Software Authors:   John Hunter, Darren Dale, Eric Firing, Michael Droettboom and the matplotlib development team
Referenced in: 234 Publications (2007–2023)
Related Software: Python; NumPy; SciPy; Scikit; IPython; pandas; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

CGAL

Software Authors:   CGAL Editorial Board
Referenced in: 370 Publications (2000–2022)
Related Software: LEDA; 2D triangulations; 2D Arrangement; Triangle; Boost; Qhull; …
Main Fields: Convex and discrete geometry (52-XX); Numerical analysis (65-XX); Computer science (68-XX)

ParaView

Software Authors:   Kitware
Referenced in: 223 Publications (2008–2022)
Related Software: Gmsh; PETSc; FEniCS; Python; Matlab; VTK; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

Schwarz-Christoffel

Software Authors:   Tobin A. Driscoll
Referenced in: 237 Publications (1996–2022)
Related Software: SC Toolbox; Matlab; SCPACK; Algorithm 785; cap; DLMF; …
Main Fields: Functions of a complex variable (30-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

Geometer's Sketchpad

Software Authors:   2009 KCP Technologies.
Referenced in: 63 Publications (1997–2021)
Related Software: Cinderella; GeoGebra; Mathematica; Cabri-geometry; GEX; CoCoA; …
Main Fields: General and overarching topics; collections (00-XX); Geometry (51-XX); Numerical analysis (65-XX)

Eigen

Software Authors:   Benoît Jacob, Gaël Guennebaud
Referenced in: 183 Publications (2012–2022)
Related Software: R; GitHub; PETSc; CUDA; Matlab; Triangle; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

SC Toolbox

Software Authors:   Driscoll, Tobin A.
Referenced in: 207 Publications (1996–2022)
Related Software: Schwarz-Christoffel; Matlab; SCPACK; Algorithm 785; cap; Chebfun; …
Main Fields: Functions of a complex variable (30-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

t-SNE

Software Authors:   Laurens van der Maaten, Geoffrey Hinton
Referenced in: 178 Publications (2008–2022)
Related Software: word2vec; ImageNet; AlexNet; UMAP; GitHub; DeepWalk; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Scilab

Software Authors:   Scilab Enterprises; Ricardo Fabbri
Referenced in: 169 Publications (1999–2022)
Related Software: Matlab; Octave; R; Mathematica; Maple; Scicos; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

MatrixMarket

Software Authors:   Boisvert, R., Pozo, R., Remington, K., Barrett, R., Dongarra, J
Referenced in: 165 Publications (1999–2022)
Related Software: SparseMatrix; Matlab; Harwell-Boeing sparse matrix collection; JDQZ; JDQR; LAPACK; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

Pajek

Software Authors:   Batagelj, Vladimir; Mrvar, Andrej
Referenced in: 135 Publications (2002–2022)
Related Software: Pajek datasets; SparseMatrix; statnet; R; DIMACS; igraph; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

JuMP

Software Authors:   I. Dunning, J. Huchette, M. Lubin
Referenced in: 124 Publications (2017–2022)
Related Software: Julia; Gurobi; GitHub; Ipopt; CPLEX; Mosek; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Computer science (68-XX)

OpenGL

Software Authors:   Khronos Group
Referenced in: 105 Publications (1994–2022)
Related Software: CUDA; Cg; OpenCL; VTK; Mathematica; Gaalop; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

Bandera

Software Authors:   Hatcliff, John; Dwyer, Matthew
Referenced in: 104 Publications (2000–2018)
Related Software: SPIN; Java PathFinder; veriSoft; SLAM; Bebop; dSPIN; …
Main Fields: Mathematical logic and foundations (03-XX); Numerical analysis (65-XX); Computer science (68-XX)

FeynArts

Software Authors:   Hagen Eck; Sepp Küblbeck
Referenced in: 116 Publications (2000–2022)
Related Software: FormCalc; FeynCalc; FeynRules; LoopTools; Mathematica; CutTools; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Quantum theory (81-XX)

VTK

Software Authors:   W. Schroeder, L. Avila, K. Martin, W. Hoffman, C. Law
Referenced in: 74 Publications (2000–2022)
Related Software: ParaView; Python; NumPy; SciPy; Gmsh; Matplotlib; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

lattice

Software Authors:   Deepayan Sarkar
Referenced in: 57 Publications (2000–2021)
Related Software: R; ggplot2; CRAN; lme4; MASS (R); nlme; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

veriSoft

Software Authors:   Dingel, Juergen
Referenced in: 74 Publications (2000–2021)
Related Software: Bandera; SPIN; Java PathFinder; BLAST; Eraser; SLAM; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Systems theory; control (93-XX)

Graphviz

Software Authors:   Ellson, John; Gansner, Emden; Koutsofios, Lefteris; North, Stephen C.; Woodhull, Gordon
Referenced in: 70 Publications (2001–2022)
Related Software: Dynagraph; R; Python; CPLEX; GAP; Rgraphviz; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

VMD

Software Authors:   Andrew Dalke, William Humphrey, Klaus Schulten
Referenced in: 75 Publications (1999–2023)
Related Software: NAMD; Gromacs; CHARMM; PyMOL; RasMol; APBS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

testmatrix

Software Authors:   N.J. Higham
Referenced in: 84 Publications (1995–2022)
Related Software: mctoolbox; CONTEST; mftoolbox; Matlab; Eigtool; LAPACK; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

hlib

Software Authors:   Steffen Börm; Lars Grasedyck; Max-Planck-Institut Leipzig
Referenced in: 84 Publications (2005–2022)
Related Software: STRUMPACK; BEM++; mctoolbox; George; GitHub; H2Lib; …
Main Fields: Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX); Integral equations (45-XX)

Healpix

Software Authors:   K. M. Górski; E. Hivon; A. J. Banday; B. D. Wandelt; F. K. Hansen; M. Reinecke; M. Bartelmann
Referenced in: 74 Publications (2007–2022)
Related Software: healpy; Python; CAMB; Matplotlib; DLMF; NumPy; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

Tensorlab

Software Authors:   L. Sorber, M. Van Barel, L. De Lathauwer
Referenced in: 81 Publications (2013–2022)
Related Software: TensorToolbox; Matlab; TT Toolbox; RandNLA; Complex Optimization Toolbox; Algorithm 862; …
Main Fields: Algebraic geometry (14-XX); Linear and multilinear algebra; matrix theory (15-XX); Numerical analysis (65-XX)

IPython

Software Authors:   F. Pérez, B.E. Granger
Referenced in: 50 Publications (2008–2022)
Related Software: Python; Matplotlib; SciPy; NumPy; Jupyter; Scikit; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

BEAN

Software Authors:   Sutradhar, Alok; Paulino, Glaucio H.; Gray, Leonard J.
Referenced in: 75 Publications (2004–2022)
Related Software: SERBA; XFEM; ABAQUS; Mfree2D; Algorithm 368; Maple; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

PLINK

Software Authors:   Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D et al
Referenced in: 58 Publications (1994–2022)
Related Software: R; GCTA; Eigenstrat; STRUCTURE; Haploview; pi-MASS; …
Main Fields: Mathematical logic and foundations (03-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Gephi

Software Authors:   M. Bastian, S. Heymann, M. Jacomy
Referenced in: 57 Publications (2012–2022)
Related Software: NetworkX; ForceAtlas2; igraph; Cytoscape; Pajek; R; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

statnet

Software Authors:   Mark S. Handcock; David R. Hunter; Carter T. Butts; Steven M. Goodreau; Pavel N. Krivitsky; Martina Morris
Referenced in: 39 Publications (2008–2022)
Related Software: R; ergm; network; sna; igraph; Pajek; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

Mcmcpack

Software Authors:   Andrew D. Martin, Kevin M. Quinn, Jong Hee Park
Referenced in: 42 Publications (2007–2022)
Related Software: R; CODA; JAGS; WinBUGS; Stan; BayesDA; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

MFEM

Software Authors:   Robert Anderson, Julian Andrej, Andrew Barker, Jamie Bramwell, Jean-Sylvain Camier, Jakub Cerveny, Veselin Dobrev, Yohann Dudouit, Aaron Fisher, Tzanio Kolev, Will Pazner, Mark Stowell, Vladimir Tomov, Johann Dahm, David Medina, Stefano Zampini
Referenced in: 57 Publications (2012–2022)
Related Software: hypre; PETSc; GitHub; deal.ii; FEniCS; GLVis; …
Main Fields: Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

EEGLAB

Software Authors:   A Delorme; S Makeig
Referenced in: 27 Publications (2005–2022)
Related Software: Matlab; FieldTrip; Scikit; R; Brainstorm; FastICA; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

GENSMAC

Software Authors:   Tom'e, M. F.; Filho, A. C.; Cuminato, J. A.; Mangiavacchi, N.; McKee, S.
Referenced in: 61 Publications (1994–2020)
Related Software: GENSMAC3D; FREEFLOW; Flow-3D; SOLA-VOF; SOLA; SLIC; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

VisIt

Software Authors:   H. Childs, E. Brugger, B. Whitlock, J. Meredith, S. Ahern, D. Pugmire, K. Biagas, M. Miller, C. Harrison, G. H. Weber, H. Krishnan, T. Fogal, A. Sanderson, C. Garth, E. W. Bethel, D. Camp, O. Rübel, M. Durant, J. M. Favre, P. Navratil
Referenced in: 53 Publications (2011–2022)
Related Software: ParaView; PETSc; Python; Gmsh; FEniCS; hypre; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

rgl

Software Authors:   Daniel Adler; Duncan Murdoch; et al.
Referenced in: 25 Publications (2006–2021)
Related Software: R; ggplot2; scatterplot3d; lattice; Matlab; KernSmooth; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

GiD

Software Authors:   R Ribó, MA de Riera Pasenau, E Escolano; CIMNE
Referenced in: 55 Publications (2000–2022)
Related Software: COMET; deal.ii; ParaView; PETSc; FreeFem++; FEniCS; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

MATSLISE

Software Authors:   Ledoux, Veerle; Van Daele, Marnix; Vanden Berghe, Guido
Referenced in: 56 Publications (2005–2022)
Related Software: SLEDGE; SLCPM12; SLEIGN2; SLDRIVER; Matlab; SLTSTPAK; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

ROOT

Software Authors:   René Brun; Fons Rademakers
Referenced in: 31 Publications (2001–2022)
Related Software: PYTHIA8; Python; GEANT4; DELPHES; ROOT; HepMC; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Quantum theory (81-XX)

ToolboxLS

Software Authors:   Ian Mitchell
Referenced in: 52 Publications (2005–2022)
Related Software: top.m; Ellipsoidal Toolbox; Multivac; helperOC; ROC-HJ; MPT; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

huge

Software Authors:   Zhao, Tuo; Liu, Han; Roeder, Kathryn; Lafferty, John; Wasserman, Larry
Referenced in: 45 Publications (2012–2023)
Related Software: glasso; R; igraph; BDgraph; Rcpp; MIM; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

BioGRID

Software Authors:   C. Stark, B. Breitkreutz, T. Reguly, L. Boucher, A. Breitkreutz, M. Tyers
Referenced in: 32 Publications (2008–2019)
Related Software: KEGG; IntAct; Cytoscape; Pfam; MCODE; R; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

GGobi

Software Authors:   Debby Swayne; Di Cook; Duncan Temple Lang; Andreas Buja
Referenced in: 34 Publications (2003–2022)
Related Software: R; XGobi; rggobi; ggplot2; RGtk2; iplots; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

tgp

Software Authors:   Robert B. Gramacy; Matt A. Taddy
Referenced in: 33 Publications (2008–2022)
Related Software: R; DiceKriging; DiceOptim; lhs; mlegp; laGP; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)

Uppaal2k

Software Authors:   Kim G. Larsen, Wang Yi, Paul Pettersson, Alexandre David, Brian Nielsen, Arne Skou, John Håkansson, Jacob Illum Rasmussen, Pavel Krcál, Ulrik Larsen, Marius Mikucionis, Leonid Mokrushin
Referenced in: 38 Publications (2000–2017)
Related Software: Uppaal; Kronos; HyTech; PRISM; SPIN; Rabbit; …
Main Fields: Mathematical logic and foundations (03-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

Overture

Software Authors:   L. Brown, William D. Henshaw, Daniel J. Quinlan.
Referenced in: 37 Publications (2000–2022)
Related Software: PETSc; CMPGRD; PARAMESH; Uintah; Ogen; SUGGAR++; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

PyMOL

Software Authors:   Schrödinger, LLC; Warren DeLano
Referenced in: 30 Publications (2005–2020)
Related Software: VMD; Python; Gromacs; Open Babel; Chimera; Jmol; …
Main Fields: General and overarching topics; collections (00-XX); Dynamical systems and ergodic theory (37-XX); Statistics (62-XX)

S+WAVELETS

Software Authors:   Andrew G. Bruce; Hong-ye Gao
Referenced in: 36 Publications (1997–2022)
Related Software: glmnet; PDCO; sparsenet; WaveLab; reccv; Julia; …
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Numerical analysis (65-XX)

STATISTICA

Software Authors:   StatSoft, Inc.
Referenced in: 35 Publications (1994–2020)
Related Software: R; SPSS; Cell-PLoc; SAS; Matlab; SYSTAT; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

UMAP

Software Authors:   Leland McInnes, John Healy, James Melville
Referenced in: 32 Publications (2020–2022)
Related Software: t-SNE; Scikit; word2vec; Python; LargeVis; UCI-ml; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Chimera

Software Authors:   Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE
Referenced in: 29 Publications (2006–2023)
Related Software: BLAST; PSI-BLAST; VMD; PyMOL; AutoDock; Gromacs; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

SPACE

Software Authors:   Matthias Schonlau
Referenced in: 34 Publications (1998–2022)
Related Software: EGO; DACE; DiceOptim; DiceKriging; ParEGO; MOEA/D; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

XGobi

Software Authors:   Swayne DF, Cook D, Buja A
Referenced in: 27 Publications (1995–2020)
Related Software: R; GGobi; MANET; ggplot2; Mondrian; iplots; …
Main Fields: Convex and discrete geometry (52-XX); Statistics (62-XX); Numerical analysis (65-XX)

Image Processing Toolbox

Software Authors:   –
Referenced in: 24 Publications (2004–2021)
Related Software: Matlab; CUDA; Wavelet Toolbox; MWSegEval; iso2mesh; CGAL; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

OVITO

Software Authors:   Alexander Stukowski
Referenced in: 32 Publications (2012–2022)
Related Software: Scikit; LAMMPS; VMD; Python; CHARMM; Adam; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

Surveillance

Software Authors:   Michael Höhle, Sebastian Meyer, Michaela Paul, Andrea Riebler, S. Steiner, M. Virtanen, Valentin Wimmer, T. Correa, M. Hofmann, C. Lang
Referenced in: 25 Publications (2005–2022)
Related Software: R; SurvStat@RKI; maptools; GMRFLib; EpiEstim; epinet; …
Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)

OSIRIS

Software Authors:   Fonseca, R.A.; Silva, L.O.; Tsung, F.S.; Decyk, V.K.; Lu, W.; Ren, C.; Mori, W.B.; Deng, S.; Lee, S.; Katsouleas, T.; Adam, J.C.
Referenced in: 33 Publications (2002–2022)
Related Software: QUICKPIC; VORPAL; PSC; UPIC-EMMA; OOPIC; MPI; …
Main Fields: Numerical analysis (65-XX); Fluid mechanics (76-XX); Optics, electromagnetic theory (78-XX)

Grad-CAM

Software Authors:   Ramprasaath R. Selvaraju, Michael Cogswell, Abhishek Das, Ramakrishna Vedantam, Devi Parikh, Dhruv Batra
Referenced in: 23 Publications (2018–2022)
Related Software: ImageNet; AlexNet; shap; PyTorch; t-SNE; Adam; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Mayavi

Software Authors:   P. Ramachandran; G. Varoquaux
Referenced in: 23 Publications (2007–2022)
Related Software: MayaVi; Python; Matplotlib; SciPy; NumPy; VTK; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

InterViewer

Software Authors:   Han, Kyungsook; Ju, Byong-Hyon; Park, Jong H.
Referenced in: 27 Publications (1991–2022)
Related Software: KEGG; Cytoscape; Pregel; MCODE; iCDI-PseFpt; STRING; …
Main Fields: History and biography (01-XX); Statistics (62-XX); Computer science (68-XX)

MuJoCo

Software Authors:   E. Todorov, T. Erez, Y. Tassa
Referenced in: 23 Publications (2016–2022)
Related Software: OpenAI Gym; TensorFlow; Adam; PyTorch; GitHub; Python; …
Main Fields: Computer science (68-XX); Mechanics of particles and systems (70-XX); Operations research, mathematical programming (90-XX)

flexclust

Software Authors:   Friedrich Leisch; Evgenia Dimitriadou
Referenced in: 24 Publications (2006–2020)
Related Software: R; SymDIRECT; Silhouettes; TCLUST; cluster (R); mclust; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

LBIE

Software Authors:   Y. Zhang, C. Bajaj; Computational Visualization Center (CVC)
Referenced in: 28 Publications (2005–2023)
Related Software: CUBIT; Mesquite; QTM; Chimera; FEAPpv; VMD; …
Main Fields: Combinatorics (05-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)

MayaVi

Software Authors:   Prabhu Ramachandran
Referenced in: 22 Publications (2003–2022)
Related Software: Mayavi; Matplotlib; Python; SciPy; VTK; NumPy; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Calculus of variations and optimal control; optimization (49-XX); Numerical analysis (65-XX)

GVF

Software Authors:   Marshall, M.S.; Herman, I.; Melançon, G.
Referenced in: 20 Publications (2001–2022)
Related Software: IsoMatch; AMPL; Prefuse; TopoLayout; PRMLT; FAIS; …
Main Fields: Combinatorics (05-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

AFNI

Software Authors:   Robert W. Cox
Referenced in: 16 Publications (2008–2022)
Related Software: FSL; R; FMRISTAT; FLIRT; RNiftyReg; AnalyzeFMRI; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

LS-SVMlab

Software Authors:   J.A.K. Suykens, T. Van Gestel, J. De Brabanter, B. De Moor, J. Vandewalle
Referenced in: 25 Publications (2006–2020)
Related Software: Matlab; UCI-ml; LIBSVM; RSVM; SVM Toolbox; longmemo; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

Seaborn

Software Authors:   M. Waskom, O. Botvinnik, D. Okane, P. Hobson, David, Y. Halchenko, S. Lukauskas, J. B. Cole, J. Warmenhoven, J. de Ruiter, S. Hoyer, J. Vanderplas, S. Villalba, G. Kunter, E. Quintero, M. Martin, A. Miles, K. Meyer, T. Augspurger, T. Yarkoni, P. Bachant, M. Williams, C. Evans, C. Fitzgerald, Brian, D. Wehner, G. Hitz, E. Ziegler, A. Qalieh, and A. Lee.
Referenced in: 8 Publications (2018–2022)
Related Software: Python; Matplotlib; NumPy; SciPy; pandas; Scikit; …
Main Fields: Algebraic geometry (14-XX); Statistics (62-XX); Computer science (68-XX)

WGCNA

Software Authors:   Peter Langfelder; Steve Horvath; Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, Bin Zhang
Referenced in: 20 Publications (2013–2021)
Related Software: R; glasso; KEGG; igraph; dynamicTreeCut; ggplot2; …
Main Fields: Combinatorics (05-XX); Linear and multilinear algebra; matrix theory (15-XX); Partial differential equations (35-XX)

GraRep

Software Authors:   S. Cao, W. Lu, Q. Xu
Referenced in: 22 Publications (2017–2022)
Related Software: node2vec; DeepWalk; word2vec; t-SNE; metapath2vec; ArnetMiner; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

Plotly

Software Authors:   Alex Johnson, Jack Parmer, Chris Parmer, Matthew Sundquis
Referenced in: 10 Publications (1982–2022)
Related Software: Python; NumPy; Matplotlib; pandas; R; SciPy; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

Reactome

Software Authors:   G. Joshi-Tope M. Gillespie; I. Vastrik; P. D'Eustachio; E. Schmidt; B. de Bono; B. Jassal; G.R. Gopinath; G.R. Wu; L. Matthews; S. Lewis; E. Birney; L. Stein
Referenced in: 13 Publications (2008–2022)
Related Software: KEGG; Bioconductor; MetaCyc; Celldesigner; BioGRID; Cytoscape; …
Main Fields: Combinatorics (05-XX); Partial differential equations (35-XX); Statistics (62-XX)

sna

Software Authors:   Carter T. Butts
Referenced in: 11 Publications (2002–2019)
Related Software: R; statnet; network; igraph; ergm; Pajek; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

SPRINT2D

Software Authors:   Berzins, M.; Fairlie, R.; Pennington, S.V.; Ware, J.M.; Scales, L.E.
Referenced in: 25 Publications (1986–2013)
Related Software: DASSL; LSODE; GEOMPACK; RODAS; PLTMG; CHEMKIN; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)

FSDA

Software Authors:   Riani M, Perrotta D, Torti F
Referenced in: 22 Publications (2013–2022)
Related Software: robustbase; TCLUST; R; mvBACON; rrcov; mclust; …
Main Fields: Statistics (62-XX)

MRST-AD

Software Authors:   Krogstad, S., Lie, K.-A., Møyner, O., Nilsen, H.M., Raynaud, X., Skaflestad, B
Referenced in: 24 Publications (2016–2022)
Related Software: MRST; Matlab; MRST-co2lab; DuMuX; IPARS; ISTL; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

Open Dynamics Engine

Software Authors:   Russell Smith
Referenced in: 16 Publications (2005–2022)
Related Software: Bullet; MuJoCo; GAZEBO; OptNet; CVXGEN; Dart; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

vcd

Software Authors:   David Meyer; Achim Zeileis; Kurt Hornik; Michael Friendly
Referenced in: 15 Publications (2009–2020)
Related Software: R; ggplot2; lattice; colorspace; boot; latticeExtra; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

ca

Software Authors:   Michael Greenacre, Oleg Nenadic
Referenced in: 11 Publications (2007–2023)
Related Software: R; FactoMineR; ade4; homals; vegan; Matlab; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX)

FREEFLOW

Software Authors:   A. Castello; F.M.F. Tomé; C.N.L. César; S. McKee; J.A. Cuminato
Referenced in: 23 Publications (1995–2017)
Related Software: GENSMAC; GENSMAC3D; Flow-3D; SOLA-VOF; HE-E1GODF; CLAWPACK; …
Main Fields: Numerical analysis (65-XX); Mechanics of deformable solids (74-XX); Fluid mechanics (76-XX)

GeoFEM

Software Authors:   Fujishiro, Issei; Chen, Li; Takeshima, Yuriko; Nakamura, Hiroko; Suzuki, Yasuko
Referenced in: 22 Publications (2001–2022)
Related Software: PETSc; Eigtool; OpenDX; ADVENTURE Autogl; VTK; METIS; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Fluid mechanics (76-XX)

Haploview

Software Authors:   J. C. Barrett; B. Fry; J. Maller; M. J. Daly
Referenced in: 19 Publications (2007–2022)
Related Software: PLINK; R; LocusZoom; qqman; CRAN; LdCompare; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

MT3DMS

Software Authors:   Zheng, C., Wang, P.P.
Referenced in: 23 Publications (2005–2022)
Related Software: MODFLOW; MODFLOW-2000; HYTEC; HYDRUS; HYDROGEOCHEM; GSLIB; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Fluid mechanics (76-XX)

SOM_PAK

Software Authors:   Kohonen, T., Hynninen, J., Kangas, J., Laaksonen, J.
Referenced in: 17 Publications (1995–2016)
Related Software: SOM; UCI-ml; LVQ_PAK; SOMLib; EMD; VisualSEEk; …
Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Computer science (68-XX)

MASON

Software Authors:   Luke S., Cioffi-Revilla C., Panait L., Sullivan K., Balan G.
Referenced in: 13 Publications (2009–2021)
Related Software: Repast Suite; NetLogo; Mesa; Julia; Py2NetLogo; Py4J; …
Main Fields: Probability theory and stochastic processes (60-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

NoMoRe

Software Authors:   Anger, Christian; Konczak, Kathrin; Linke, Thomas
Referenced in: 22 Publications (2001–2012)
Related Software: ASSAT; Cmodels; Smodels; Lparse; Datalog; Gringo; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

qgraph

Software Authors:   Sacha Epskamp, Giulio Costantini, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann, Denny Borsboom
Referenced in: 17 Publications (2014–2022)
Related Software: R; mgm; igraph; glasso; psych; bnlearn; …
Main Fields: General and overarching topics; collections (00-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

SCIRun

Software Authors:   Parker, Steven G.; Weinstein, David M.; Johnson, Christopher R.
Referenced in: 16 Publications (1997–2012)
Related Software: Diffpack; LAPACK; Mathematica; Uintah; VTK; ELLPACK; …
Main Fields: General and overarching topics; collections (00-XX); Numerical analysis (65-XX); Computer science (68-XX)

VIM

Software Authors:   Matthias Templ, Andreas Alfons, Alexander Kowarik, Bernd Prantner
Referenced in: 13 Publications (2015–2021)
Related Software: R; MICE; Amelia; impute; Stata; SPSS; …
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

CERR

Software Authors:   Deasy, J., Blanco, A.I., Clark, V.H
Referenced in: 19 Publications (2006–2022)
Related Software: Matlab; Ipopt; TROTS; PSwarm; OPTI; QCQP; …
Main Fields: Numerical analysis (65-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

GPSS World

Software Authors:   minutemansoftware
Referenced in: 20 Publications (2005–2021)
Related Software: Globus Toolkit; JADE
Main Fields: Integral transforms, operational calculus (44-XX); Probability theory and stochastic processes (60-XX); Computer science (68-XX)

GrGen

Software Authors:   Geiß, Rubino; Batz, Gernot Veit; Grund, Daniel; Hack, Sebastian; Szalkowski, Adam
Referenced in: 15 Publications (2006–2020)
Related Software: GROOVE; AGG; PROGRES; Graph transformation benchmarks; Fujaba; GP 2; …
Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Computer science (68-XX)

NodeTrix

Software Authors:   Nathalie Henry, Jean-Daniel Fekete, Michael J. McGuffin
Referenced in: 16 Publications (2010–2021)
Related Software: ChordLink; ThemeRiver; Algorithm 447; PIWI; MoleView; GitHub; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)

RWeka

Software Authors:   Hornik, Kurt; Buchta, Christian; Zeileis, Achim
Referenced in: 13 Publications (2009–2021)
Related Software: R; UCI-ml; rpart; C4.5; WEKA; partykit; …
Main Fields: General and overarching topics; collections (00-XX); Statistics (62-XX); Numerical analysis (65-XX)

TMSmesh

Software Authors:   Chen M., Lu B.
Referenced in: 21 Publications (2013–2020)
Related Software: APBS; MIBPB; tabipb; TABI; TetGen; AFMPB; …
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)

FERUM

Software Authors:   Terje Haukaas; Armen Der Kiureghian
Referenced in: 18 Publications (2006–2018)
Related Software: Allaire_Scilab; Allaire_FreeFem; compliance; UQLab; Burkardt; Sparse Grid Interpolation; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Statistics (62-XX); Numerical analysis (65-XX)

GTS

Software Authors:   S. Popinet; T. Jones
Referenced in: 20 Publications (2000–2019)
Related Software: CGAL; DOLFIN; FEniCS; Triangle; FFC; Qhull; …
Main Fields: Algebraic topology (55-XX); Numerical analysis (65-XX); Computer science (68-XX)

PELLPACK

Software Authors:   Houstis, E.N.; Rice, J.R.; Weerawarana, S.; Catlin, A.C.; Papachiou, P.; Wang, K.-Y.; Gaitatzes, M.
Referenced in: 18 Publications (1998–2008)
Related Software: ELLPACK; PYTHIA; LAPACK; SciNapse; Mathematica; METIS; …
Main Fields: General and overarching topics; collections (00-XX); Partial differential equations (35-XX); Calculus of variations and optimal control; optimization (49-XX)