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Found 20 Software Packages (Results 1–20)

Metatool

Software Authors:   von Kamp A, Schuster S
Cited in: 22 Publications (2007–2019)
Related Software: efmtool; KEGG; YANA; BioModels; EFMEvolver; FFCA; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

CERENA

Software Authors:   Atefeh Kazeroonian, Fabian Fröhlich, Andreas Raue, Fabian J. Theis, Jan Hasenauer
Cited in: 13 Publications (2014–2020)
Related Software: SUNDIALS; iNA; MEANS; Julia; StochKit2; StochDynTools; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

Data2Dynamics

Software Authors:   Raue A, Steiert B, Schelker M, Kreutz C, Maiwald T, Hass H, et al
Cited in: 8 Publications (2018–2021)
Related Software: AMIGO; PESTO; PEtab; COPASI; SUNDIALS; R; …
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX)

SABRE

Software Authors:   Didier, F., Henzinger, T.A., Mateescu, M., Wolf, V
Cited in: 5 Publications (2011–2016)
Related Software: PRISM; MARCIE; Bio-PEPA; SBML Test Suite; INFAMY; MRMC; …
Main Fields: Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX); Computer science (68-XX)

HRSSA

Software Authors:   Marchetti, Luca; Priami, Corrado; Thanh, Vo Hong
Cited in: 6 Publications (2016–2019)
Related Software: HSimulator; COPASI; STEPS; SHAVE; CERENA
Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)

sbioPN

Software Authors:   Roberto Bertolusso; Marek Kimmel
Cited in: 6 Publications (2012–2022)
Related Software: SPPARKS
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Biology and other natural sciences (92-XX)

CRNreals

Software Authors:   G. Szederkényi, J.R. Banga, A.A. Alonso
Cited in: 5 Publications (2014–2022)
Related Software: GLPK; YALMIP; CLP; SCIP; Matlab
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Classical thermodynamics, heat transfer (80-XX)

expa

Software Authors:   Steven L. Bell, Bernhard Ø. Palsson
Cited in: 2 Publications (2018)
Related Software: COBRA Toolbox; vegan; Octave; CPLEX; anNET; Bio-SPICE; …
Main Fields: Combinatorics (05-XX); Biology and other natural sciences (92-XX)

ADGenKinetics

Software Authors:   Elsheikh, A.
Cited in: 2 Publications (2015–2018)
Related Software: Optimica; JModelica; dcc; CasADi; Modelica; DASPK 3.0; …
Main Fields: Ordinary differential equations (34-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

ANDy

Software Authors:   Franck Delaplace, Cinzia Di Giusto, Jean-Louis Giavitto, Hanna Klaudel
Cited in: 1 Publication (2018)
Related Software: Charlie; SNOOPY; SNAKES
Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

fastGapFill

Software Authors:   Thiele, I., Vlassis, N. and Fleming, R
Cited in: 2 Publications (2019)
Related Software: COBRA Toolbox; meneco; COBRApy; Clingo; Clingcon; MetaCyc; …
Main Fields: Calculus of variations and optimal control; optimization (49-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)

HSimulator

Software Authors:   Marchetti, Luca; Lombardo, Rosario; Priami, Corrado
Cited in: 2 Publications (2017–2019)
Related Software: HRSSA; STEPS; COPASI
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

IBRENA

Software Authors:   Liu, Gang; Neelamegham, Sriram
Cited in: 0 Publications
Related Software:
Main Fields:

KINSOLVER

Software Authors:   Aleman-Meza, Boanerges; Yu, Yihai; Sch\"uttler, Heinz-Bernd; Arnold, Jonathan; Taha, Thiab R.
Cited in: 1 Publication (2009)
Related Software: Virtual Cell; JigCell; YSMP; MEG; STOCKS; MetaModel; …
Main Fields: Biology and other natural sciences (92-XX)

LNA++

Software Authors:   Feigelman, Justin; Weindl, Daniel; Theis, Fabian J.; Marr, Carsten; Hasenauer, Jan
Cited in: 1 Publication (2018)
Related Software: GitHub; CERENA; iNA; Python; StochKit2; StochSens; …
Main Fields: Biology and other natural sciences (92-XX)

ML-Rules

Software Authors:   University of Rostock
Cited in: 1 Publication (2017)
Related Software:
Main Fields: Biology and other natural sciences (92-XX); Systems theory; control (93-XX)

MomentClosure.jl

Software Authors:   Augustinas Sukys, Ramon Grima
Cited in: 0 Publications
Related Software: Catalyst.jl; MEANS; CERENA; ModelingToolkit.jl; Compartor; DifferentialEquations.jl; …
Main Fields:

SPSens

Software Authors:   Sheppard PW, Rathinam M, Khammash M
Cited in: 0 Publications
Related Software: StochSens; SUNDIALS; ISAP; StochSS; SensSB; COPASI; …
Main Fields:

DistributedFBA

Software Authors:   Laurent Heirendt, Ronan M.T. Fleming, Ines Thiele
Cited in: 0 Publications
Related Software:
Main Fields:

SeQuaiA

Software Authors:   Češka, Milan; Chau, Calvin; Křetínský, Jan
Cited in: 0 Publications
Related Software:
Main Fields: