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Found 23 Software Packages (Results 1–23)

KEGG

Software Authors:   Minoru Kanehisa; Susumu Goto
Referenced in: 194 Publications (2003–2022)
Related Software: Bioconductor; R; UniProt; MetaCyc; Cytoscape; Reactome; …
Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)

Cantera

Software Authors:   D. Goodwin, N. Malaya, H. Moffat, R. Speth
Referenced in: 52 Publications (2009–2022)
Related Software: GRI-Mech 3.0; CHEMKIN; CVODE; SUNDIALS; GitHub; Python; …
Main Fields: Numerical analysis (65-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)

CERENA

Software Authors:   Atefeh Kazeroonian, Fabian Fröhlich, Andreas Raue, Fabian J. Theis, Jan Hasenauer
Referenced in: 13 Publications (2014–2020)
Related Software: SUNDIALS; iNA; MEANS; Julia; StochKit2; StochDynTools; …
Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)

CoNtRol

Software Authors:   Donnell P, Banaji M, Marginean A, Pantea C
Referenced in: 13 Publications (2015–2022)
Related Software: crntwin; MESSI; GLPK; SCIP
Main Fields: Algebraic geometry (14-XX); Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX)

ERODE

Software Authors:   Cardelli, L., Tribastone, M., Tschaikowski, M., Vandin, A.
Referenced in: 9 Publications (2017–2021)
Related Software: z3; BioNetGen; Bio-PEPA; PRISM; NFsim; Flow*; …
Main Fields: Commutative algebra (13-XX); Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX)

SGN Sim

Software Authors:   Ribeiro AS, Lloyd-Price J
Referenced in: 7 Publications (2009–2019)
Related Software: RegulonDB; GeneNetWeaver; Path2Models; SOSlib; LASSIE; BioPreDyn-bench; …
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

parest_dae

Software Authors:   Casian Pantea, Ankur Gupta, James B. Rawlings, Gheorghe Craciun
Referenced in: 7 Publications (2014–2020)
Related Software: SINGULAR; neural ideal; GitHub; Ginsim; Macaulay2; DAISY; …
Main Fields: Field theory and polynomials (12-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX)

PoCaB

Software Authors:   Samal, Satya Swarup; Errami, Hassan; Weber, Andreas
Referenced in: 7 Publications (2012–2015)
Related Software: BioModels; polymake; z3; KEGG; REDLOG; SDeval; …
Main Fields: Algebraic geometry (14-XX); Ordinary differential equations (34-XX); Numerical analysis (65-XX)

sbioPN

Software Authors:   Roberto Bertolusso; Marek Kimmel
Referenced in: 6 Publications (2012–2022)
Related Software: SPPARKS
Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Biology and other natural sciences (92-XX)

CRNreals

Software Authors:   G. Szederkényi, J.R. Banga, A.A. Alonso
Referenced in: 5 Publications (2014–2022)
Related Software: GLPK; YALMIP; CLP; SCIP; Matlab
Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Classical thermodynamics, heat transfer (80-XX)

CRNSimulator

Software Authors:   Soloveichik, D.
Referenced in: 3 Publications (2017–2019)
Related Software: z3; Mathematica; CRN++
Main Fields: Computer science (68-XX)

BRTSim

Software Authors:   Federico Maggi
Referenced in: 2 Publications (2020)
Related Software: TOUGHREACT
Main Fields: Biology and other natural sciences (92-XX)

crnpy

Software Authors:   E. Tonello
Referenced in: 2 Publications (2017–2019)
Related Software: GitHub; Python; BioModels
Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

ppsim

Software Authors:   David Doty, Eric Severson
Referenced in: 1 Publication (2021)
Related Software: StochKit2; GillesPy2; Jupyter; Python; GitHub; StochKit
Main Fields: Biology and other natural sciences (92-XX)

Catalyst.jl

Software Authors:   Sam Isaacson; et al.
Referenced in: 0 Publications
Related Software: MEANS; CERENA; ModelingToolkit.jl; Compartor; DifferentialEquations.jl; Julia; …
Main Fields:

KINSOLVER

Software Authors:   Aleman-Meza, Boanerges; Yu, Yihai; Sch\"uttler, Heinz-Bernd; Arnold, Jonathan; Taha, Thiab R.
Referenced in: 1 Publication (2009)
Related Software: JigCell; Virtual Cell; YSMP; MEG; STOCKS; MetaModel; …
Main Fields: Biology and other natural sciences (92-XX)

LNA++

Software Authors:   Feigelman, Justin; Weindl, Daniel; Theis, Fabian J.; Marr, Carsten; Hasenauer, Jan
Referenced in: 1 Publication (2018)
Related Software: GitHub; CERENA; iNA; Python; StochKit2; StochSens; …
Main Fields: Biology and other natural sciences (92-XX)

LNetReduce

Software Authors:   Buffard, Marion; Desoeuvres, Aurélien; Naldi, Aurélien; Requilé, Clément; Zinovyev, Andrei; Radulescu, Ovidiu
Referenced in: 1 Publication (2021)
Related Software: GitHub; Python; NetworkX
Main Fields: Combinatorics (05-XX); Biology and other natural sciences (92-XX)

MomentClosure.jl

Software Authors:   Augustinas Sukys, Ramon Grima
Referenced in: 0 Publications
Related Software: Catalyst.jl; MEANS; CERENA; ModelingToolkit.jl; Compartor; DifferentialEquations.jl; …
Main Fields:

Netscan

Software Authors:   Clarke, Bertrand; Fawcett, Glenn; Mittenthal, Jay E.
Referenced in: 1 Publication (2004)
Related Software:
Main Fields: Biology and other natural sciences (92-XX)

ReNView

Software Authors:   Udit Gupta; Dionisios G. Vlachos
Referenced in: 0 Publications
Related Software: Graphviz; OpenSMOKE++; Cantera; Python
Main Fields:

Z34Bio

Software Authors:   B. Yordanov, C. Wintersteiger, Y. Hamadi, H. Kugler
Referenced in: 1 Publication (2016)
Related Software: C32SAT; QAGen; ICS; RSat; AMUSE; FaCT++; …
Main Fields: Computer science (68-XX)

SeQuaiA

Software Authors:   Češka, Milan; Chau, Calvin; Křetínský, Jan
Referenced in: 0 Publications
Related Software:
Main Fields: