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Found 31 Software Packages (Results 1–31)

LAGAN

Software Authors:   M. Brudno, C.B. Do, G.M. Cooper, M.F. Kim, E. Davydov, E.D. Green, A. Sidow, S. Batzoglou
Referenced in: 10 Publications (2005–2019)
Related Software: MUMMER; BLASTZ; PatternHunter; BLAT; MUSCLE; ClustalW; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

OrthoMCL

Software Authors:   Li, L., Stoeckert, C.J., Roos, D.
Referenced in: 8 Publications (2006–2020)
Related Software: MSOAR; BLAST; PSI-BLAST; eggNOG; Proteinortho; PHYLIP; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Statistics (62-XX)

TETRA

Software Authors:   Teeling H, Waldmann J, Lombardot T, Bauer M, Glöckner FO
Referenced in: 2 Publications (2011–2020)
Related Software: MEGAN; TACOA; BLAST; PSI-BLAST; DOTUR; Pfam; …
Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

PathBLAST

Software Authors:   Kelley, B. P., Yuan, B., Lewitter, F., Sharan, R., Stockwell, B. R., Ideker T
Referenced in: 6 Publications (2011–2015)
Related Software: KEGG; BLAST; PSI-BLAST; MAVisto; FANMOD; ClustalW; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

MSOAR

Software Authors:   Fu, Z., Chen, X., Vacic, V., Nan, P., Zhong, Y., Jiang, T.; Shi, G., Zhang, L.
Referenced in: 4 Publications (2013–2020)
Related Software: OrthoMCL; GASTS; MrBayes; BIONJ; PHYLIP; UniProt; …
Main Fields: General and overarching topics; collections (00-XX); Combinatorics (05-XX); Computer science (68-XX)

Circos

Software Authors:   Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., Jones, S.J., Marra, M.A.
Referenced in: 4 Publications (2018–2021)
Related Software: Vega; Polaris; Hackage; Seaborn; ggplot2; OGDF; …
Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)

GASTS

Software Authors:   Xu, A., Moret, B.
Referenced in: 4 Publications (2013–2019)
Related Software: MSOAR; OrthoMCL; FastTree; GRAPPA; RAxML; Mauve; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

REDfly

Software Authors:   Halfon M, Gallo S, Bergman C
Referenced in: 2 Publications (2019–2020)
Related Software: R; expansion-network; MaBoSS; GitHub; Python; Ginsim; …
Main Fields: Biology and other natural sciences (92-XX)

CONFAC

Software Authors:   Suresh Karanam, Carlos S. Moreno
Referenced in: 1 Publication (2009)
Related Software: CGHMultiArray; AS 62; ArrayExpress; JASPAR; rVISTA; AS 159
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)

Profunc

Software Authors:   R. A. Laskowski, J. D. Watson, J. M. Thornton
Referenced in: 1 Publication (2015)
Related Software: I-TASSER; SW1PerS; UProC; PBEQ-Solver; DOMpro; darch; …
Main Fields: Biology and other natural sciences (92-XX)

Rnaz

Software Authors:   Gruber AR, Findeiss S, Washietl S, Hofacker IL, Stadler PF
Referenced in: 2 Publications (2015–2017)
Related Software: Rfam; Bioconductor; R; TopHat; KEGG; ViennaRNA; …
Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)

HTSanalyzeR

Software Authors:   Xin Wang, Camille Terfve, John C. Rose, Florian Markowetz
Referenced in: 1 Publication (2022)
Related Software: ModuleDiscoverer; SigMod; DOMINO; NetSig; DIAMOnD; SANTA; …
Main Fields: Biology and other natural sciences (92-XX)

i-ADHoRe

Software Authors:   Proost, S., Fostier, J., De Witte, D., Dhoedt, B., Demeester, P., Van de Peer, Y., Vandepoele, K.
Referenced in: 2 Publications (2019)
Related Software: CYNTENATOR; CAMSA; hybridSPAdes; GTED; HINGE; Canu; …
Main Fields: General and overarching topics; collections (00-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)

INFUSE

Software Authors:   Dunemann, Oliver; Geist, Ingolf; Jesse, Roland; Sattler, Kai-Uwe; Stephanik, Andreas
Referenced in: 2 Publications (2002–2003)
Related Software:
Main Fields: Computer science (68-XX)

Starr

Software Authors:   Benedikt Zacher, Achim Tresch
Referenced in: 0 Publications
Related Software: Bioconductor; Ringo; R
Main Fields:

TOUCAN

Software Authors:   Aerts, S., Van Loo, P., Thijs, G., Maye r, H., de Martin, R., Moreau, Y., De Moor, B.
Referenced in: 1 Publication (2007)
Related Software: SMART; DAMBE; AMADA; YACOP; GOtcha; ESTAP; …
Main Fields: Biology and other natural sciences (92-XX)

BioWorkbench

Software Authors:   Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza R. Vasconcelos, Kary Ocaña, Luiz M. R. Gadelha Jr
Referenced in: 0 Publications
Related Software: Taverna; Docker; WEP; GATK; SciPhy; RAxML; …
Main Fields:

CATS

Software Authors:   Han Yu, Andrew S. Yoo, Iva Greenwald
Referenced in: 1 Publication (2010)
Related Software: CisModule
Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)

CoCoNUT

Software Authors:   Mohamed I Abouelhoda, Stefan Kurtz, Enno Ohlebusch
Referenced in: 1 Publication (2022)
Related Software: essaMEM; Edlib; Winnowing; lra; MUMmer4; Minimap2; …
Main Fields: Biology and other natural sciences (92-XX)

EDGAR

Software Authors:   uni-giessen.de
Referenced in: 1 Publication (2013)
Related Software: PGAT; PanCake
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

FOUNTAIN

Software Authors:   Buerstedde, Jean-Marie; Prill, Florian
Referenced in: 0 Publications
Related Software:
Main Fields:

GOTax

Software Authors:   Schlicker, A.; Rahnenführer, J.; Albrecht, M.; Lengauer, T.; Domingues, F. S.
Referenced in: 0 Publications
Related Software:
Main Fields:

GUIDANCE2

Software Authors:   Sela, I., Ashkenazy, H., Katoh, K., Pupko, T.
Referenced in: 1 Publication (2017)
Related Software: Opal; LEON; RASCAL; Probalign; PCMA; AQUA; …
Main Fields: Biology and other natural sciences (92-XX)

MAPIT

Software Authors:   Nip, Alexander; Liu, Lin; Seif, Charbei; Lang, B.Franz; Burger, Gertraud
Referenced in: 1 Publication (2000)
Related Software:
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

MuGeN

Software Authors:   Hoebeke, M., Nicolas, P., Bessières, P.
Referenced in: 1 Publication (2009)
Related Software:
Main Fields: Harmonic analysis on Euclidean spaces (42-XX); Statistics (62-XX); Numerical analysis (65-XX)

PanCake

Software Authors:   Ernst, Corinna; Rahmann, Sven
Referenced in: 1 Publication (2013)
Related Software: PGAT; EDGAR
Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)

PhyloCSF

Software Authors:   Lin MF, Jungreis I, Kellis M
Referenced in: 1 Publication (2015)
Related Software: RNAcode; Matlab
Main Fields: Dynamical systems and ergodic theory (37-XX); Biology and other natural sciences (92-XX)

RepeatAssembler

Software Authors:   Farman ML, Gilkerson JW, Jaromczyk JW, Staben C
Referenced in: 1 Publication (2007)
Related Software:
Main Fields: Combinatorics (05-XX); Biology and other natural sciences (92-XX)

ThIEF

Software Authors:   Polishko, Anton; Hasan, Md. Abid; Pan, Weihua; Bunnik, Evelien M.; Le Roch, Karine; Lonardi, Stefano
Referenced in: 1 Publication (2017)
Related Software: MONKEY; DGW; Bowtie 2; ChromHMM; GitHub; modENCODE; …
Main Fields: Biology and other natural sciences (92-XX)

CHSMiner

Software Authors:   Zhen Wang; Guohui Ding; Zhonghao Yu; Lei Liu; Yixue Li
Referenced in: 0 Publications
Related Software:
Main Fields:

rphast

Software Authors:   Melissa Hubisz, Katherine Pollard, and Adam Siepel
Referenced in: 0 Publications
Related Software:
Main Fields: