Matlab Software Authors: MathWorks Inc Cited in: 13,208 Publications (1982–2024) Related Software: Simulink; LMI toolbox; Maple; MATLAB ODE suite; ode23; ode45; … Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)
CGAL Software Authors: CGAL Editorial Board Cited in: 382 Publications (2000–2023) Related Software: LEDA; 2D triangulations; 2D Arrangement; Triangle; Boost; Qhull; … Main Fields: Convex and discrete geometry (52-XX); Numerical analysis (65-XX); Computer science (68-XX)
FGb Software Authors: J.-C. Faugère Cited in: 249 Publications (1998–2023) Related Software: Magma; SINGULAR; Maple; ISOLATE; Kronecker; FLASH; … Main Fields: Number theory (11-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX)
SHOGUN Software Authors: Sonnenburg, Sören; Rätsch, Gunnar; Schäfer, Christin; Schölkopf, Bernhard; Henschel, Sebastian; Widmer, Christian; Behr, Jonas; Zien, Alexander; De Bona, Fabio; Binder, Alexander; Gehl, Christian; Franc, Vojtěch Cited in: 85 Publications (2005–2022) Related Software: SimpleMKL; LIBSVM; UCI-ml; Mosek; SpicyMKL; SVMlight; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Computer science (68-XX)
Cell-PLoc Software Authors: Chou, K. C.; Shen, H. B. Cited in: 82 Publications (2008–2019) Related Software: Euk-mPLoc; LIBSVM; iLoc-Euk; Memtype-2L; Plant-mPLoc; iLoc-Hum; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
Chaste Software Authors: Bernabeu, Miguel O.; Bordas, Rafel; Pathmanathan, Pras; Pitt-Francis, Joe; Cooper, Jonathan; Garny, Alan; Gavaghan, David J.; Rodriguez, Blanca; Southern, James A.; Whiteley, Jonathan P. Cited in: 53 Publications (2009–2022) Related Software: CellML; PhysiCell; PETSc; CellSys; Biocellion; Matlab; … Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)
RegulonDB Software Authors: Gama-Castro, S.; Jimenez-Jacinto, V.; Peralta-Gil, M.; Santos-Zavaleta, A.; Peñaloza-Spinola, M.I.; Contreras-Moreira, B.; Segura-Salazar, J.; Muñiz-Rascado, L.; Martinez-Flores, I.; Salgado, H.; Bonavides-Martinez, C.; Abreu-Goodger, C.; Rodríguez-Penagos, C.; Miranda-Ríos, J.; Morett, E.; Merino, E.; Huerta, A.M.; Treviño-Quintanilla, L.; Collado-Vides, J. Cited in: 30 Publications (2002–2020) Related Software: KEGG; ARACNE; GeneNetWeaver; R; WebLogo; JASPAR; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
Pse-in-One Software Authors: Liu, B.; Liu, F.; Wang, X.; Chen, J.; Fang, L.; Chou, K. -C.: Cited in: 42 Publications (2015–2021) Related Software: iRSpot-PseDNC; PseKNC; iPro54-PseKNC; pLoc-mEuk; iRNA-PseColl; pLoc-mAnimal; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
PDB2PQR Software Authors: T. Dolinsky, J. Nielsen, A. McCammon, N. Baker Cited in: 33 Publications (2006–2022) Related Software: APBS; MIBPB; TABI; tabipb; CHARMM; PBEQ-Solver; … Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX)
REVEAL Software Authors: Liang, S., Fuhrman, S., Somogyi, R Cited in: 22 Publications (2003–2022) Related Software: KEGG; R; BoolNet; E-CELL; GEPASI; Macaulay2; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
CompuCell3D Software Authors: Popławski, Nikodem J.; Shirinifard, Abbas; Swat, Maciej; Glazier, James A. Cited in: 24 Publications (2008–2022) Related Software: PhysiCell; Chaste; EmbryoMaker; ParaView; CellSys; Microvessel Chaste; … Main Fields: Partial differential equations (35-XX); Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX)
Biopython Software Authors: Cock, P. J. A.; Antao, T.; Chang, J. T.; Chapman, B. A.; Cox, C. J.; Dalke, A.; Friedberg, I.; Hamelryck, T.; Kauff, F.; Wilczynski, B.; De Hoon, M. J. Cited in: 7 Publications (2009–2019) Related Software: Python; bioperl; BioJava; DendroPy; TRANSFAC; UniProt; … Main Fields: General and overarching topics; collections (00-XX); Mathematical logic and foundations (03-XX); Statistics (62-XX)
sbtoolbox Software Authors: Henning Schmidt; Mats Jirstrand Cited in: 12 Publications (2009–2019) Related Software: Matlab; SBML-SAT; libSBML; Sbmltoolbox; SymPy; Python; … Main Fields: Ordinary differential equations (34-XX); Dynamical systems and ergodic theory (37-XX); Calculus of variations and optimal control; optimization (49-XX)
SW1PerS Software Authors: J. A. Perea, A. Deckard, S. B. Haase, J. Harer Cited in: 12 Publications (2015–2022) Related Software: TDA; Ripser; javaPlex; Persistence Landscape; PersistenceImages; TopologyNet; … Main Fields: Dynamical systems and ergodic theory (37-XX); Algebraic topology (55-XX); Statistics (62-XX)
Bio-SPICE Software Authors: Garvey TD, Lincoln P, Pedersen CJ et al Cited in: 8 Publications (2005–2014) Related Software: COPASI; BioModels; Taverna; GEPASI; KEGG; Celldesigner; … Main Fields: History and biography (01-XX); Numerical analysis (65-XX); Computer science (68-XX)
Lynx Software Authors: Ganesh, V., O’Donnell, C.W., Soos, M., Devadas, S., Rinard, M.C., Solar-Lezama, A. Cited in: 9 Publications (2013–2021) Related Software: MathCheck; Maple; FFTW; SMT-LIB; Mathematica; z3; … Main Fields: Combinatorics (05-XX); Number theory (11-XX); Geometry (51-XX)
PESTO Software Authors: Stapor, P.; et al Cited in: 9 Publications (2018–2022) Related Software: Data2Dynamics; AMIGO; COPASI; SUNDIALS; MEIGO; R; … Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Numerical analysis (65-XX)
Virtual Cell Software Authors: Loew, L. M.; Schaff, J. C. Cited in: 7 Publications (2003–2020) Related Software: GEPASI; E-CELL; SCAMP; MEG; KEGG; COPASI; … Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Computer science (68-XX)
ADAM Software Authors: Hinkelmann F, Brandon M, Guang B, McNeill R, Blekherman G, Veliz-Cuba A, Laubenbacher R Cited in: 8 Publications (2011–2020) Related Software: Ginsim; Macaulay2; BoolNet; SNOOPY; Polynome; multistatepdscontrol; … Main Fields: Algebraic geometry (14-XX); Linear and multilinear algebra; matrix theory (15-XX); Biology and other natural sciences (92-XX)
MultiLoc2 Software Authors: Blum, T.; Briesemeister, S.; Kohlbacher, O. Cited in: 6 Publications (2011–2014) Related Software: MultiLoc; Cell-PLoc; iLoc-Euk; Euk-PLoc; Euk-mPLoc; Plant-mPLoc; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
CCP4 Software Authors: Winn, M.D.; Ballard, C.C.; Cowtan, K.D.; Dodson, E.J.; Emsley, P. Cited in: 4 Publications (2005–2019) Related Software: Coot; UglyMol; UniProt; MOLREP; EXI; molstack; … Main Fields: General and overarching topics; collections (00-XX); Statistical mechanics, structure of matter (82-XX); Operations research, mathematical programming (90-XX)
MCFDR Software Authors: Sandve, G., Ferkingstad, E.; Nygard, S Cited in: 7 Publications (2014–2020) Related Software: MMCTest; ORIOGEN; simctest; QuickMMCTest; iBBiG; bootlib; … Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Numerical analysis (65-XX)
parest_dae Software Authors: Casian Pantea, Ankur Gupta, James B. Rawlings, Gheorghe Craciun Cited in: 7 Publications (2014–2020) Related Software: SINGULAR; neural ideal; GitHub; Ginsim; Macaulay2; DAISY; … Main Fields: Field theory and polynomials (12-XX); Commutative algebra (13-XX); Algebraic geometry (14-XX)
PoCaB Software Authors: Samal, Satya Swarup; Errami, Hassan; Weber, Andreas Cited in: 7 Publications (2012–2015) Related Software: BioModels; polymake; z3; KEGG; REDLOG; SDeval; … Main Fields: Algebraic geometry (14-XX); Ordinary differential equations (34-XX); Numerical analysis (65-XX)
STOCHSIMGPU Software Authors: Klingbeil, G.; Erban, R.; Giles, M.; Maini, P. K. Cited in: 6 Publications (2012–2022) Related Software: BayesDA; MLMCandMultifidelityForABC; AABC; Smoldyn; MesoRD; STEPS; … Main Fields: Partial differential equations (35-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)
AgentCell Software Authors: Thierry Emonet, Charles M. Macal, Michael J. North, Charles E. Wickersham, Philippe Cluzel Cited in: 6 Publications (2007–2020) Related Software: BacSim; FreeFem++; STOCHSIM Main Fields: Partial differential equations (35-XX); Biology and other natural sciences (92-XX)
HRSSA Software Authors: Marchetti, Luca; Priami, Corrado; Thanh, Vo Hong Cited in: 6 Publications (2016–2019) Related Software: HSimulator; COPASI; STEPS; SHAVE; CERENA Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)
MEIGO Software Authors: Egea JA, Henriques D, Cokelaer T, Villaverde AF, MacNamara A, Danciu DP, Banga JR, Saez-Rodriguez J. Cited in: 2 Publications (2010–2019) Related Software: COPASI; R; AMIGO; tellurium; BioNetGen; PyBioNetFit; … Main Fields: Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
X-PLOR Software Authors: Axel T. Brünger Cited in: 6 Publications (1995–2012) Related Software: CHARMM; Mathematica; VMD; PyMOL; Gromacs; NAMD; … Main Fields: Dynamical systems and ergodic theory (37-XX); Numerical analysis (65-XX); Statistical mechanics, structure of matter (82-XX)
BALL Software Authors: O. Kohlbacher, H.P. Lenhof, et al. Cited in: 5 Publications (2000–2011) Related Software: LEDA; MeshLab; Netgen; KELLEY; AMBER; ATLAS; … Main Fields: Computer science (68-XX); Optics, electromagnetic theory (78-XX); Quantum theory (81-XX)
Hy3S Software Authors: H. Salis, V. Sotiropoulos, Y. N. Kaznessis Cited in: 5 Publications (2015–2019) Related Software: COPASI; DASSL; URDME; Bio-PEPA; GreatSPN Main Fields: Ordinary differential equations (34-XX); Probability theory and stochastic processes (60-XX); Numerical analysis (65-XX)
PDB-REPRDB Software Authors: Noguchi, T.; Akiyama, Y. Cited in: 1 Publication (2009) Related Software: MODELLER; PROMOTIF; VMD; R; BLAST; PSI-BLAST; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
SAPPER Software Authors: S. Zhang, J. Yang, W. Jin Cited in: 5 Publications (2014–2019) Related Software: TALE; GADDI; Fg-index; GraphGrep; GString; NeMa; … Main Fields: Combinatorics (05-XX); Computer science (68-XX)
SEGM Software Authors: Benard, Emmanuel; Michel, Christian J. Cited in: 5 Publications (2009–2013) Related Software: fastDNAml Main Fields: Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)
ShaPo Software Authors: Pouderoux J., Berndt M., Kenamond M., Shashkov M. Cited in: 5 Publications (2017–2022) Related Software: FLAG; r3d; GitHub; CutFEM; MMMFEM; Portage; … Main Fields: Partial differential equations (35-XX); Numerical analysis (65-XX); Mechanics of deformable solids (74-XX)
TauFactor Software Authors: S.J. Cooper, A. Bertei, P.R. Shearing, J.A. Kilner, N.P. Brandon Cited in: 2 Publications (2021–2022) Related Software: DandeLiion; LibTIFF; PoreSpy; PyBaMM; AMReX; OpenImpala; … Main Fields: Partial differential equations (35-XX); Computer science (68-XX); Mechanics of deformable solids (74-XX)
Gaggle Software Authors: P.T. Shannon, D.J. Reiss, R. Bonneau, N.S. Baliga Cited in: 0 Publications Related Software: GOPET; BayGO; GOLEM; GOtcha; BiNGO; ProbCD; … Main Fields: –
KIRMES Software Authors: Sebastian J. Schultheiss, Wolfgang Busch, Jan U. Lohmann, Oliver Kohlbacher, Gunnar Rätsch Cited in: 2 Publications (2015–2017) Related Software: CoMIK; mGene; AAindex; KEGG; LIBSVM; POIMs Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
MCQ4Structures Software Authors: Zok, Tomasz; Popenda, Mariusz; Szachniuk, Marta Cited in: 4 Publications (2014–2015) Related Software: MAMMOTH; FRASS; Bio3d; Jmol; iPARTS; DIAL; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Operations research, mathematical programming (90-XX)
Path2Models Software Authors: Büchel F, Rodriguez N, Swainston N, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van˜Iersel M, Keating S, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dräger A, Novére NL Cited in: 4 Publications (2015–2019) Related Software: PRMLT; SINDy; Hybrid-SINDy; GitHub; NOMAD; GeneNetWeaver; … Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Numerical analysis (65-XX)
QNSTOP Software Authors: B. D. Amos, D. R. Easterling, L. T. Watson, W. I. Thacker, B. S. Castle, M. W. Trosset Cited in: 4 Publications (2016–2020) Related Software: UOBYQA; DELAUNAYSPARSE; Algorithm 587; DeWall; LAPACK; VTDIRECT95; … Main Fields: Statistics (62-XX); Numerical analysis (65-XX); Operations research, mathematical programming (90-XX)
TinkerCell Software Authors: Deepak Chandran, Frank T. Bergmann, Herbert M. Sauro Cited in: 2 Publications (2014–2015) Related Software: TABASCO; lpSolve; SUNDIALS; SciPy; ProMoT; SynBioSS; … Main Fields: Ordinary differential equations (34-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
AQUASOL Software Authors: P. Koehl, M. Delarue Cited in: 3 Publications (2015–2017) Related Software: SDPBS; Python; AFMPB; MIBPB; PDB2PQR; DOLFIN; … Main Fields: Numerical analysis (65-XX); Optics, electromagnetic theory (78-XX); Quantum theory (81-XX)
ARACNe-AP Software Authors: Lachmann A, Giorgi FM, Lopez G, Califano A. Cited in: 2 Publications (2018–2019) Related Software: pycit; infotheory; IDTxl; MDEntropy; SciPy; NumPy; … Main Fields: Biology and other natural sciences (92-XX)
CentiServer Software Authors: Jalili, M., Salehzadeh-Yazdi, A., Asgari, Y., Arab, S.S., Yaghmaie, M., Ghavamzadeh, A., et al. Cited in: 2 Publications (2016–2022) Related Software: igraph; sna; ggraph; influenceR; CINNA; R; … Main Fields: Combinatorics (05-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
CLARK Software Authors: Ounit, R.; Wanamaker, S.; Close, T.J.; Lonardi, S. Cited in: 3 Publications (2017–2022) Related Software: MetaProb; SpEED; PatternHunter; SHRiMP; GTDB-Tk; CheckM; … Main Fields: Biology and other natural sciences (92-XX)
CMBSlib Software Authors: Sylvian Soliman, François Fages Cited in: 3 Publications (2005–2008) Related Software: BIOCHAM; KEGG; Cellerator; CSPLib Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX); Systems theory; control (93-XX)
COBRApy Software Authors: Ali Ebrahim, Joshua A Lerman, Bernhard O Palsson, Daniel R Hyduke Cited in: 2 Publications (2015–2019) Related Software: METRADE; DFBAlab; MoNeRe; COBRA Toolbox; fastGapFill; meneco; … Main Fields: Computer science (68-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
comput-biol Software Authors: Valiente, Gabriel Cited in: 2 Publications (2009–2012) Related Software: PhyloNetwork; QNet; clustervalidation; SSAP; CRAN; CPAN; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
IsoLasso Software Authors: Wei Li, Jianxing Feng, Tao Jiang Cited in: 2 Publications (2019–2022) Related Software: HISAT; Salmon; Gurobi; MultiTrans; Scallop2; ShoRAH; … Main Fields: Statistics (62-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
MI-GRAAL Software Authors: Oleksii Kuchaiev; Natasa Przulj Cited in: 2 Publications (2013–2020) Related Software: IsoRankN; IsoRank; Natalie; GHOST; NABEECO; SPINAL; … Main Fields: Combinatorics (05-XX); Statistics (62-XX); Computer science (68-XX)
MSAProbs Software Authors: Y. Liu, B. Schmidt, and D. L. Maskell Cited in: 2 Publications (2013–2017) Related Software: T-coffee; Probalign; Kalign; MUSCLE; ClustalW; ProbCons; … Main Fields: Biology and other natural sciences (92-XX)
NewGOA Software Authors: Yu, G.; Fu, G.; Wang, J.; Zhao, Y. Cited in: 3 Publications (2020–2022) Related Software: Tensor2Tensor; COFACTOR; DeepGOPlus; DeepGO; QAUST; ProTranslator; … Main Fields: Statistics (62-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
NIMEFI Software Authors: Ruyssinck, J., Huynh-Thu, V.A., Geurts, P., Dhaene, T., Demeester, P., Saeys, Y. Cited in: 2 Publications (2017–2020) Related Software: Espresso; InterpretML; Alibi Explain; auto-sklearn; dalex; AI Explainability 360; … Main Fields: Statistics (62-XX); Computer science (68-XX)
OKVAR-Boost Software Authors: Lim N, Senbabaoglu Y, Michailidis G, d'Alché-Buc F. Cited in: 3 Publications (2013–2016) Related Software: ARACNE; fda (R); GeneNetWeaver; G1DBN; UNLocBoX; SIRENE; … Main Fields: Operator theory (47-XX); Probability theory and stochastic processes (60-XX); Statistics (62-XX)
OpenCOR Software Authors: Alan Garny; Peter J. Hunter Cited in: 3 Publications (2020–2021) Related Software: MathML; MATCONT; CESE; LabHEART; JSim; CL_MATCONT; … Main Fields: Biology and other natural sciences (92-XX); Systems theory; control (93-XX)
PairClone Software Authors: Zhou, T., Müller, P., Sengupta, S., Ji, Y. Cited in: 2 Publications (2019–2020) Related Software: PyClone; TreeClone; PhyloWGS; THetA; BayCount; GitHub; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
PFCorr Software Authors: Bajaj, Chandrajit; Bauer, Benedikt; Bettadapura, Radhakrishna; Vollrath, Antje Cited in: 3 Publications (2013–2021) Related Software: NFFT3; LORM; MTEX; Chebfun2; Chebfun; F2Dock; … Main Fields: Integral transforms, operational calculus (44-XX); Manifolds and cell complexes (57-XX); Statistics (62-XX)
ProDiGe Software Authors: Fantine Mordelet; Jean-Philippe Vert Cited in: 3 Publications (2014–2020) Related Software: Aleph; PRMLT; Medlda; EnsembleSVM; LIBLINEAR; LIBSVM Main Fields: Probability theory and stochastic processes (60-XX); Statistics (62-XX); Computer science (68-XX)
PROMALS3D Software Authors: Jimin Pei, Nick V. Grishin Cited in: 2 Publications (2016–2017) Related Software: MUSCLE; MAFFT; UniProt; Opal; LEON; RASCAL; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
SynBioSS Software Authors: Hill A, Tomshine J, Weeding E, Sotiropoulos V, Kaznessis Y Cited in: 1 Publication (2017) Related Software: TABASCO; lpSolve; SUNDIALS; SciPy; ProMoT; BioJADE; … Main Fields: Partial differential equations (35-XX); Biology and other natural sciences (92-XX)
Aber-OWL Software Authors: Robert Hoehndorf, Luke Slater, Paul N Schofield, Georgios V Gkoutos Cited in: 1 Publication (2016) Related Software: Galaxy; Ontobee; EDAM Browser; WebProtege; BioPortal; JavaScript; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
ALF Software Authors: Daniel A. Dalquen, Maria Anisimova, Gaston H. Gonnet, Christophe Dessimoz Cited in: 2 Publications (2016–2020) Related Software: SimPhy; CodonPhyML; ntCard; ACUA; PAML; CodonTest; … Main Fields: Biology and other natural sciences (92-XX)
AutoClass@IJM Software Authors: Achcar, Fiona; Camadro, Jean-Michel; Mestivier, Denis Cited in: 1 Publication (2018) Related Software: ZIFA; AutoClass; t-SNE; SpectralCAT; BayesLCA Main Fields: Statistics (62-XX); Computer science (68-XX)
Bio.Phylo Software Authors: Talevich E, Invergo BM, Cock PJ, Chapman BA Cited in: 0 Publications Related Software: Biopython; DendroPy; Python; FastTree; scikit-bio; BEAGLE; … Main Fields: –
BioPreDyn-bench Software Authors: Villaverde AF, Henriques D, Smallbone K, Bongard S, Schmid J, Cicin-Sain D, Crombach A, Saez-Rodriguez J, Mauch K, Balsa-Canto E, Mendes P, Jaeger J, Banga JR Cited in: 2 Publications (2019–2021) Related Software: PESTO; Data2Dynamics; SUNDIALS; EvA2; Qlopt; AMIGO; … Main Fields: Ordinary differential equations (34-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
CellPublisher Software Authors: L.A. Flórez, C.R. Lammers, R. Michna, J. Stülke Cited in: 1 Publication (2015) Related Software: Pathway Commons; BiNoM; Ginsim; elmap; Google Maps API; GBrowse; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
CyclinPred Software Authors: Kalita, M. K.; Nandal, U. K.; Pattnaik, A.; Sivalingam, A.; Ramasamy, G.; Kumar, M.; Raghava, G. P.; Gupta, D. Cited in: 2 Publications (2016–2021) Related Software: UniProt; PseAAC; iRSpot-GAEnsC; PseAAC-General; iSS-Hyb-mRMR; iPPI-Esml; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
DBSolve Software Authors: – Cited in: 2 Publications (2009–2016) Related Software: GNA; COPASI; EPE Main Fields: Computer science (68-XX); Game theory, economics, finance, and other social and behavioral sciences (91-XX); Biology and other natural sciences (92-XX)
G-MAPSEQ Software Authors: Wojciechowski, Pawel; Frohmberg, Wojciech; Kierzynka, Michal; Zurkowski, Piotr; Blazewicz, Jacek Cited in: 2 Publications (2016–2020) Related Software: Algorithm 457; R-CHIE; Bowtie 2; RazerS; Musket; G-DNA; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Operations research, mathematical programming (90-XX)
GillesPy Software Authors: J. H. Abel, B. Drawert, A. Hellander, and L. R. Petzold Cited in: 2 Publications (2021–2022) Related Software: StochPy; VODE Main Fields: Approximations and expansions (41-XX); Probability theory and stochastic processes (60-XX); Biology and other natural sciences (92-XX)
GReTA Software Authors: Alessandro Attanasi, Andrea Cavagna, Lorenzo Del Castello, Irene Giardina, Asja Jelic, Stefania Melillo, Leonardo Parisi, Fabio Pellacini, Edward Shen, Edmondo Silvestri, Massimiliano Viale Cited in: 1 Publication (2018) Related Software: Trackpy; TracTrac; OpenLPT; OpenPTV; Python; MyPTV Main Fields: Ordinary differential equations (34-XX); Partial differential equations (35-XX); Statistical mechanics, structure of matter (82-XX)
HMMoC Software Authors: – Cited in: 1 Publication (2012) Related Software: Bali-phy; Rose; Statalign; Clustal X; CLUSTAL; ppALIGN Main Fields: Biology and other natural sciences (92-XX)
HSIM Software Authors: Amar, Patrick; Paulevé, Loïc Cited in: 2 Publications (2012–2014) Related Software: BIOCHAM Main Fields: Dynamical systems and ergodic theory (37-XX); Operations research, mathematical programming (90-XX); Biology and other natural sciences (92-XX)
MOLNs Software Authors: Drawert, Brian; Trogdon, Michael; Toor, Salman; Petzold, Linda; Hellander, Andreas Cited in: 1 Publication (2017) Related Software: PyURDME; mftoolbox; mlrnd; ML; Eigtool; Galaxy; … Main Fields: Partial differential equations (35-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
multistatepdscontrol Software Authors: Sordo Vieira, Luis; Laubenbacher, Reinhard C.; Murrugarra, David Cited in: 2 Publications (2020–2021) Related Software: CANA; GitHub; ADAM; Ginsim; Macaulay2 Main Fields: Biology and other natural sciences (92-XX); Systems theory; control (93-XX)
NetMix2 Software Authors: Chitra, Uthsav; Park, Tae Yoon; Raphael, Benjamin J. Cited in: 2 Publications (2020–2022) Related Software: NetSig; Cytoscape; Dendrix; ModuleDiscoverer; SigMod; DOMINO; … Main Fields: Biology and other natural sciences (92-XX)
PathSim Software Authors: N.F. Polys, D.A. Bowman, C. North, R.C. Laubenbacher, K. Duca Cited in: 0 Publications Related Software: BioAmbient Machine; BioShape; Bio-PEPA; MASyV; BioWar Main Fields: –
PeTTSy Software Authors: Domijan, M.; Brown, P. E.; Shulgin, B. V.; Rand, D. A. Cited in: 2 Publications (2020) Related Software: SALib; CRAN; Matlab; SobolGSA; DyGloSA; SAFE Toolbox; … Main Fields: Dynamical systems and ergodic theory (37-XX); Statistics (62-XX); Biology and other natural sciences (92-XX)
Rainbowfish Software Authors: Almodaresi, Fatemeh; Pandey, Prashant; Patro, Rob Cited in: 2 Publications (2017–2022) Related Software: BWA; SplitMEM; GitHub; VARI; GATB; SDSL; … Main Fields: Combinatorics (05-XX); Computer science (68-XX); Biology and other natural sciences (92-XX)
Real Software Authors: Angelopoulos, Nicos; Abdallah, Samer; Giamas, Georgios Cited in: 2 Publications (2016–2019) Related Software: STRING; proSQLite; SWI-Prolog; Pengines; YAP-Prolog; R; … Main Fields: Statistics (62-XX); Computer science (68-XX)
Simpathica Software Authors: Bud Mishra, Marco Antoniotti, Salvatore Paxia, Nadia Ugel Cited in: 2 Publications (2007–2013) Related Software: cc(FD); SoftCADS; WinBEST-KIT; PLMaddon; ESSYNS; MetMAP; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
Sincera Software Authors: Minzhe Guo, Hui Wang, S Steven Potter, Jeffrey A Whitsett, Yan Xu Cited in: 2 Publications (2017–2021) Related Software: SC3; GlobalMIT; slingshot; SNN-Cliq; MrTADFinder; CIDR; … Main Fields: Statistics (62-XX); Computer science (68-XX)
Starcode Software Authors: Zorita, E., Cusco, P., Filion, G.J. Cited in: 2 Publications (2019–2020) Related Software: BWA; Compareads; Commet; PBSIM; GATB; Bowtie 2; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
STICK Software Authors: Lagorce, Xavier; Benosman, Ryad Cited in: 2 Publications (2015–2018) Related Software: SpiNNaker Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
StrBioLib Software Authors: John-Marc Chandonia Cited in: 1 Publication (2016) Related Software: Ontobee; PlantTFDB; eggNOG; ELM; dbCAN; antiSMASH; … Main Fields: Statistics (62-XX); Biology and other natural sciences (92-XX)
TangleSolve Software Authors: Saka, Y.; Vázquez, Mariel Cited in: 2 Publications (2008–2010) Related Software: TopoICE Main Fields: Manifolds and cell complexes (57-XX); Numerical analysis (65-XX); Biology and other natural sciences (92-XX)
TMBP Software Authors: Zeng, Jia Cited in: 0 Publications Related Software: Matlab Main Fields: Computer science (68-XX)
Tree-k-RHC Software Authors: Xiao, Jing; Lou, Tiancheng; Jiang, Tao Cited in: 2 Publications (2009–2012) Related Software: Allegro Main Fields: Combinatorics (05-XX); Statistics (62-XX); Numerical analysis (65-XX)
VF2++ Software Authors: Jüttner, Alpár; Madarasi, Péter Cited in: 1 Publication (2018) Related Software: Qiskit Terra; Atompack; Rust; SNAP; Qtcodes; PyO3; … Main Fields: Combinatorics (05-XX); Biology and other natural sciences (92-XX)
Beatbox Software Authors: McFarlane, Ross; Biktasheva, IV Cited in: 1 Publication (2016) Related Software: GitHub; CHeart; OpenCMISS; LifeV; oomph-lib; Scotch; … Main Fields: Mechanics of deformable solids (74-XX); Biology and other natural sciences (92-XX)
BETAWARE Software Authors: Castrense Savojardo, Piero Fariselli, Rita Casadio Cited in: 1 Publication (2015) Related Software: OP-ELM Main Fields: Statistics (62-XX); Computer science (68-XX)
Bio-AIMS Software Authors: Cristian R. Munteanu; Humberto González-Díaz; Carlos Fernandez-Lozano; José Antonio Seoane Fernández Cited in: 1 Publication (2011) Related Software: GPCR-CA; MARCH-INSIDE; PHP; NL MIND-BEST; Quat-2L; GPCR-GIA; … Main Fields: Computer science (68-XX); Biology and other natural sciences (92-XX)
Biodoop Software Authors: S. Leo, F. Santoni, G. Zanetti Cited in: 1 Publication (2013) Related Software: Crossbow; Probalign; k-means++; Jnomics; T-coffee; Kalign; … Main Fields: Biology and other natural sciences (92-XX)
BioFVM Software Authors: Ahmadreza Ghaffarizadeh, Samuel H. Friedman, Paul Macklin Cited in: 1 Publication (2021) Related Software: PaScaL_TDMA; BioFVM-X; hypre; Biocellion; PhysiCell; Intel TBB; … Main Fields: Biology and other natural sciences (92-XX)
BioStar Software Authors: Parnell LD, Lindenbaum P, Shameer K et al Cited in: 1 Publication (2017) Related Software: iGTP; TOPAL; ExaBayes; CLANN; BMGE; INDELible; … Main Fields: General and overarching topics; collections (00-XX); Biology and other natural sciences (92-XX)
BSim Software Authors: Gorochowski, T.E., et al. Cited in: 1 Publication (2022) Related Software: BasiCO; MobsPy; COPASI; BioNetGen; iBioSim; Python Main Fields: Biology and other natural sciences (92-XX)
Cellware Software Authors: Pawan Dhar; Tan Chee Meng; Sandeep Somani; Li Ye; Anand Sairam; Mandar Chitre; Zhu Hao; Kishore Sakharkar Cited in: 1 Publication (2010) Related Software: MCELL; Dizzy; SGN Sim; GEPASI; Gromacs Main Fields: Biology and other natural sciences (92-XX)
cgdsr Software Authors: Anders Jacobsen, Augustin Luna Cited in: 1 Publication (2020) Related Software: rags2ridges; RSpectra; KEGG; spcov; Rcpp; glasso; … Main Fields: Statistics (62-XX)
ChemoPy Software Authors: D.-S. Cao, Q.-S. Xu, Q.-N. Hu, Y.-Z. Liang Cited in: 1 Publication (2018) Related Software: – Main Fields: Statistics (62-XX)